Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 716 / 0 unknown protein AT1G54730 67 / 2e-11 Major facilitator superfamily protein (.1.2.3) AT3G05165 66 / 6e-11 Major facilitator superfamily protein (.1.2.3.4.5) AT2G48020 66 / 8e-11 Major facilitator superfamily protein (.1.2) AT3G05155 64 / 2e-10 Major facilitator superfamily protein (.1) AT3G05160 64 / 4e-10 Major facilitator superfamily protein (.1.2) AT1G08930 64 / 5e-10 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27350 63 / 7e-10 SFP1 Major facilitator superfamily protein (.1) AT5G27360 62 / 1e-09 SFP2 Major facilitator superfamily protein (.1) AT1G08920 61 / 3e-09 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029972 [exp] 1086 / 0 AT2G48060 422 / 1e-130 unknown protein Lus10008175 [exp] 772 / 0 AT2G48060 1855 / 0.0 unknown protein Lus10000212 [exp] 458 / 7e-145 AT2G48060 1077 / 0.0 unknown protein Lus10027982 [exp] 423 / 1e-125 AT2G48060 1580 / 0.0 unknown protein Lus10029968 [exp] 369 / 2e-121 AT2G48060 241 / 6e-74 unknown protein Lus10027981 [exp] 227 / 6e-69 AT2G48060 239 / 1e-73 unknown protein Lus10029967 [exp] 171 / 5e-50 AT2G48060 126 / 3e-35 unknown protein Lus10029964 [exp] 134 / 1e-32 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 117 / 6e-28 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037700 [exp] 823 / 0 AT2G48060 2623 / 0.0 unknown protein Potri.014G137200 [exp] 770 / 0 AT2G48060 3339 / 0.0 unknown protein Potri.013G027500 [exp] 70 / 4e-12 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 68 / 2e-11 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.002G212900 [exp] 68 / 2e-11 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 67 / 4e-11 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 66 / 5e-11 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 62 / 1e-09 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 61 / 3e-09 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.001G226600 [exp] 56 / 4e-09 AT5G27350 104 / 4e-27 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter CL0015 [flax] [poplar] PF12166 [flax] [poplar] Piezo_RRas_bdg Piezo non-specific cation channel, R-Ras-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035352 pacid=23170636 polypeptide=Lus10035352 locus=Lus10035352.g ID=Lus10035352.BGIv1.0 annot-version=v1.0 ATGTTGCCTGGACAAAAATGTTACGGTTTGTCCCTCTTTCTTGGATTGCGGGTTTACGAGCCTTCTTTCGCAAGTTTGGAGTCAGGCCTGAGGGGAAAAG TTTTAGTCATTGTCTCGTGCTTACTTAGATACAATGTTTTCCATTGGTTACGGAAAAAATCATCCAAGTTCCAGAAAGCAAGAAAGTGGGACGAGTCTTG CGAGTTGTTTAGTTCATTTGATGAGACACAATACACGACGAGAAGTCCAGGCAAGGAAACCGAAACTTCTGACCTTTCCAGACCCTTGTTAGAGAAACCA GAAGACGAAGCAGGAGTTCATTCTTGGACATCGTTCATTACCGAGCTTTCGAATTGGCATGAGCTTGGAGAGGATCCGAATGAGTGTGAAGATTTCAAAG AGAGGCCTAAGTTGACTCGGAAACCGATCCATATGTTGAGAAACGAAAGGTTGAGAAAGCAGATAAGAACTCTGAAGGTGTACGTGAAGTTTTTGATAGA GAATATCTTCAATCTGTTTGGCCTCGAGATCAATATGATCACGTTATGTATCGCTAGCTTTGCAGTTCTGAATACAATCTCATTGCTCTATGATGCATCA CTTGCTGCTTTCATTCTGTTACCTTGCCATTTGACGAAGAAGCTTTGGCCGATGTTCATGTTCCTATTTGGCTCAGTCATCACCCTTGAGTACCTTGCCA TTTGGCTGTTTCGATTCGGGCAGCAACATAACCCCAGTGGTAGTAGTACACAAGTTCCTTGCAATAACTCTTGGGAGAGGTCTGATATCTTCTTGTATCA CTGCCAAAAGTGCTGGCTAGGACTCATAGTTGATGATCCATGCATTCTTGTAAGCTATTATGTAGTCTTCTTGCTTGCGTGTTTCAAGTTCCGCGCTGAT CGTATGTCAAGCCAGACAGTATCGGATACCTACCAGCAAATGATATGCCAGTACAAGAGTTCCTCACTTAACGATCTCTCATTCAAAACGAGATACAAGT GGACGGTATTTGATTACCTTCGGCTTTATAGCTACTGCCACTTGCTAGATCTCGTCCTTGCTTTGATCCTGATCACCGGCACACTCGAATTCGACATTCT ACACCTAGGTTATCTTGGTCTCTCCCTGGTATTCTTCAGGATGAGGCTAGAAATGCTGAAAAACAAGAACCGGATATTCAAGTACTTGAGGATGTACAAT TTCGCCATAATCGTTCTTTCCTTGACCTATCAATCACCTTATGTGGGGACTTTCTGTGATGGAAAATGTGGGTTGATAGCCTACATCAGCGATGTCGTTG GCTTCTATAAGTATGATTACGGATTTCGGATCACTTCAAGATCAGCACTCGTGGAGATCATCATACACATTCTGGTTGCTGTGCCATCTGCATTGCACAT TTTGGGGTGGTTGTTCATCCCTGAATCACCAAGATGGCTGGACTCATTTCAGACATGCCAAGGTCAGAAATCGGACAAGGTTCTCGAGCTATTCCAGCTC AAATATGTTCATGATATCGTTGTTGGTGTTGGACTAATGATGTTCCAGCACTTTAGTGGGACTACTGCTATTACATACTATGCAATGTCCATATTCGAGG CAGCTGTGCTGGATCGAGTCATATACCTTTGTTCATTCGCCACGGGAAAGCTGTTCTTTTATCTATTCAACATCGTCCTCTTCACATATGCTGCCACTAA GTACGCTTGGAATATGGAACCGCAACACAGTAATGCAGGAAGGTTAGCACTCCGAGCTATTTATCTCGCGAAGGCGGCCTCTCTAACACTCCAAGCAATA CAAATACACCATGGCATTCCACATGAAAGCACTTTGTACAGACAGTTCTTGACGAGCAACATATCCAGGATTAATTACTTGGGATTCAGGCTCTATCGTG CTCTCCCTTTCCTTTACGAATTGCGATGTGTGCTTGATTGGTCTTGCACAACTACTTCGTTGACCATGTACGACTGGTTGAAGTTGGAGGATATTCATGC GAGCTTGTTTCTCGTAAAATGTGATGCGGATCTCTATAGAGCGAAACACCAACAAGGACAAAAACAGGCAAAAATGACCAAGTTCTGCAATGGGATATGC TTGTTCTTCATATTGATGTGTGTCATCTGGGCTCCAATGCTGATGTATAGCAGTGGGAATCCGACGAACATAGCTAATCCTATAAAAGATGCAAACGTGA GAATCGAGATACGATCAGTGAGCGGAAGGCTGACATTGTACGAGACAACACTATGTGAAAAGATCCCCTGGGAGAGACTCGACACGAGTATCAACCTGGA CCCTCGAGGCTACTTAAGCTCGTATAACAAGCAAGACATTCAGCTGATATGCTGCCAAGCCGATGCCAGCACATTGTGGCGTGTCCCAGATGTTGTGCAG GAGAGGTACACGAGATCTCTTACACGTGCAATGGACATCATATTCTCCTGGCAATTGACAAGAGATAGACCGAGAGGTAAAGAAGCTGTTAAGTACGAGT TGGTTGTTCAAGACGAAGATCTTCCATCCTACTCTGACGTAATGAAAGTGCTCAATGGTACTGCCAATAGCTTCAGCATATACAATGTGTATCCTAGATA CTTCCGAGTCACTGGATCGGGAGACGTGAGGTCACTTGAACAAACGGTAGACATGGTGAGCGGAGATCTTGTGCTGAACCAAGGGAATTCGGATTGGTGG TCATTTCATGACACGAGTGCATCAACATCGGGATGTGGGATGTCGACTGGGCCTATGGCTGTGATCATATCAGAGGAAACACCTCAGGGCATCATAGGTG AAACACTGAGCAAGTTCAGCATCTGGGGACTTTACATCACATTCGTGCTAGCTGTTGGCCGGTTCATCAGGCTACAATGCTCCGATCTTCGAATGAGGAT ACCATTCGAGAACCTTCCTTCTTGCGAAAGATTGTTAGCAATATGTGAGAACATTTACGTAGCAAGAGCAGAAGGCGAGCTTGAAGTAGAAGAGGTACTT TACTGGACATTAGTGAAGATTTTTCGGACGCCACATATGTTGCTTGAGTACACCAACCCTGACTAA
AA sequence Show only first row Show all	>Lus10035352 pacid=23170636 polypeptide=Lus10035352 locus=Lus10035352.g ID=Lus10035352.BGIv1.0 annot-version=v1.0 MLPGQKCYGLSLFLGLRVYEPSFASLESGLRGKVLVIVSCLLRYNVFHWLRKKSSKFQKARKWDESCELFSSFDETQYTTRSPGKETETSDLSRPLLEKP EDEAGVHSWTSFITELSNWHELGEDPNECEDFKERPKLTRKPIHMLRNERLRKQIRTLKVYVKFLIENIFNLFGLEINMITLCIASFAVLNTISLLYDAS LAAFILLPCHLTKKLWPMFMFLFGSVITLEYLAIWLFRFGQQHNPSGSSTQVPCNNSWERSDIFLYHCQKCWLGLIVDDPCILVSYYVVFLLACFKFRAD RMSSQTVSDTYQQMICQYKSSSLNDLSFKTRYKWTVFDYLRLYSYCHLLDLVLALILITGTLEFDILHLGYLGLSLVFFRMRLEMLKNKNRIFKYLRMYN FAIIVLSLTYQSPYVGTFCDGKCGLIAYISDVVGFYKYDYGFRITSRSALVEIIIHILVAVPSALHILGWLFIPESPRWLDSFQTCQGQKSDKVLELFQL KYVHDIVVGVGLMMFQHFSGTTAITYYAMSIFEAAVLDRVIYLCSFATGKLFFYLFNIVLFTYAATKYAWNMEPQHSNAGRLALRAIYLAKAASLTLQAI QIHHGIPHESTLYRQFLTSNISRINYLGFRLYRALPFLYELRCVLDWSCTTTSLTMYDWLKLEDIHASLFLVKCDADLYRAKHQQGQKQAKMTKFCNGIC LFFILMCVIWAPMLMYSSGNPTNIANPIKDANVRIEIRSVSGRLTLYETTLCEKIPWERLDTSINLDPRGYLSSYNKQDIQLICCQADASTLWRVPDVVQ ERYTRSLTRAMDIIFSWQLTRDRPRGKEAVKYELVVQDEDLPSYSDVMKVLNGTANSFSIYNVYPRYFRVTGSGDVRSLEQTVDMVSGDLVLNQGNSDWW SFHDTSASTSGCGMSTGPMAVIISEETPQGIIGETLSKFSIWGLYITFVLAVGRFIRLQCSDLRMRIPFENLPSCERLLAICENIYVARAEGELEVEEVL YWTLVKIFRTPHMLLEYTNPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10035352 [exp]	0	1
AT3G14090		ATEXO70D3	exocyst subunit exo70 family p...		Lus10001113 [exp]	1.0	0.7847
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	3.0	0.7207
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015865 [exp]	3.5	0.6746
AT2G48060			unknown protein		Lus10029972 [exp]	6.0	0.7814
AT1G74350			Intron maturase, type II famil...		Lus10017037 [exp]	6.3	0.7205
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024144 [exp]	19.3	0.6455
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	24.0	0.6788
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	26.8	0.5987
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10035318 [exp]	37.6	0.5768
AT1G24095			Putative thiol-disulphide oxid...		Lus10030653 [exp]	40.9	0.5967

Compare expression of checked genes

Lus10035352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.