Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54740 87 / 1e-19 Protein of unknown function (DUF3049) (.1) AT5G22390 50 / 3e-07 Protein of unknown function (DUF3049) (.1) AT3G63020 43 / 9e-05 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT1G03170 42 / 0.0003 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029969 [exp] 189 / 6e-60 AT1G54740 74 / 4e-16 Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 62 / 4e-11 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10020626 [exp] 61 / 2e-10 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 43 / 0.0001 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10013353 [exp] 43 / 0.0002 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10004098 [exp] 41 / 0.0008 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037600 [exp] 144 / 1e-40 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.013G027100 [exp] 142 / 4e-40 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.009G162800 [exp] 69 / 2e-13 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 56 / 7e-09 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.010G239800 [exp] 46 / 8e-06 ND / Potri.009G016600 [exp] 47 / 1e-05 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G209100 [exp] 45 / 3e-05 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 43 / 0.0001 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G019600 [exp] 42 / 0.0002 AT1G54740 44 / 5e-05 Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 41 / 0.0006 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10035353 pacid=23170535 polypeptide=Lus10035353 locus=Lus10035353.g ID=Lus10035353.BGIv1.0 annot-version=v1.0 ATGATGATGACTTTCTGCAAGAAGAGTGTCCACTCCTTCCTGGGTCTTCCTCCGCCGGCGGCGGAGTCCGATCACCTCCCTCTTTCCCCTTCACCCAACA AAGGATTAGGGCTAATTACTCCCACCGGCGATTTCCCCGTCCACCGCCCGCCCAATGTCGTCGAATCGGCATCCATCGTGAAGCCCCACTCGCAGCCGAT GGCAGATAAATTCATCGACCTCGGCGTCGACGGGCTGATGTCATGCACGGAGAGCCTGGGATTCGAGAGTTGCGGGGATAACGGCGATTTCTGTTCGACG GCGTTGGTGCGGAGCACCGCTGCCGGAGACGGAGATCTGAGGTGGAGGGATCGGATCCGGGAGCGGCGGAGGAGGAGGGAGGCCGGGAAGGTGAAGAAGT TTCCTCCGCCGATCTCGTCGCTGAACAAGAACGGCCAGCCGAATTTCTTTCTCCGACCGGTGAGGAGGAACGGCCGGCTGGAGCTGACGGAGGTGAGGAT CGACCGGCCGGAGGTTCTCAGGGCGACGAGGGAAGATGGACGGCTGCGATTGCTTCTCGTTGGGGATGAAATCGAGATGGATGGTGAGGTGGAAGAGGAG GAACAACAGAATCCGGAAGATAGGGAGAATCAAAACACGGAGTTGGATTCGATCGAGGAAGACGATCGGGTGGAAGAAACGGCGTCGTTTTGCATGGAAT CGGAAGAACGAGAAGAAGAAGAAAAGGAAGAAGAAGAGAAGGGAACTTCGTGGTCGTCGTCGGAGGAGGAGGAGGAAGAGGGGAATATTAGGAGAGAGGA ATGGGATTTCCCGGTGAACGGAGAAGGATTCAGGCGGTGTTACGATCTAGTGAACCACCGCCACGTAGGCGGCGCAAAGCACATGTGGAGGGCACATTGC CACATGTGGAGGCAACATTGCGTGACAACCAAGTGA
AA sequence Show only first row Show all	>Lus10035353 pacid=23170535 polypeptide=Lus10035353 locus=Lus10035353.g ID=Lus10035353.BGIv1.0 annot-version=v1.0 MMMTFCKKSVHSFLGLPPPAAESDHLPLSPSPNKGLGLITPTGDFPVHRPPNVVESASIVKPHSQPMADKFIDLGVDGLMSCTESLGFESCGDNGDFCST ALVRSTAAGDGDLRWRDRIRERRRRREAGKVKKFPPPISSLNKNGQPNFFLRPVRRNGRLELTEVRIDRPEVLRATREDGRLRLLLVGDEIEMDGEVEEE EQQNPEDRENQNTELDSIEEDDRVEETASFCMESEEREEEEKEEEEKGTSWSSSEEEEEEGNIRREEWDFPVNGEGFRRCYDLVNHRHVGGAKHMWRAHC HMWRQHCVTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	8.9	0.8771
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	13.6	0.8696
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10006760 [exp]	14.4	0.8082
AT1G54740			Protein of unknown function (D...		Lus10029969 [exp]	18.3	0.8047
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	19.2	0.8499
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	20.0	0.8630
AT2G44820			unknown protein		Lus10036053 [exp]	20.5	0.8642
AT5G62270			unknown protein		Lus10035022 [exp]	21.1	0.8674
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	22.0	0.8054
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	23.0	0.8694

Compare expression of checked genes

Lus10035353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.