Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 549 / 0 Major facilitator superfamily protein (.1.2.3) AT2G48020 482 / 4e-168 Major facilitator superfamily protein (.1.2) AT5G18840 461 / 7e-160 Major facilitator superfamily protein (.1) AT3G20460 421 / 5e-144 Major facilitator superfamily protein (.1) AT1G08930 421 / 1e-143 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05150 419 / 3e-143 Major facilitator superfamily protein (.1) AT5G27350 410 / 6e-140 SFP1 Major facilitator superfamily protein (.1) AT1G08920 407 / 9e-139 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08890 407 / 1e-138 Major facilitator superfamily protein (.1) AT1G08900 406 / 2e-138 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029966 [exp] 694 / 0 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 462 / 4e-160 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 461 / 3e-159 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029960 [exp] 457 / 3e-157 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 454 / 4e-157 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 458 / 7e-155 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 444 / 8e-154 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033812 [exp] 433 / 8e-149 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 426 / 2e-146 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 670 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 474 / 5e-165 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.002G212900 [exp] 474 / 6e-165 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 471 / 1e-163 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 467 / 4e-162 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 457 / 7e-158 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 452 / 2e-156 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 426 / 3e-146 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 404 / 2e-137 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 352 / 6e-117 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035354 pacid=23170531 polypeptide=Lus10035354 locus=Lus10035354.g ID=Lus10035354.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCAGAGATTTCAACCTCTTTGATTGAGAAACAGAATGGTTCTTCTTCTTCTTCAGCTGCTTCAAGCATACTTATTCTGAGCATCATGGTAG CTGTCTCAGGTTCATATGTTTTTGGAACAGCTATTGGTTACTCGTCACCTACTCAGTCAGGAATCATGGATGACCTTTCCCTCTCTGTAGCTGAGTACTC TCTGTTTGGTTCAATACTGACGATAGGAGCAATGATAGGTGCTGTAATGAGTGGGAGAATAGCTGATTACATTGGTAGAAGAGGTTTGATGGCATTTTCA GAAGCTTTCTGCATCTTAGGTTGGCTAGCAATAGCATTTGCCAAGGTTACTTGGTGGCTTGATGCTGGAAGGCTACTTGTAGGGTATGGGATGGGACTGC TTTCATATGTAGTTCCTGTGTTCATAGCTGAGATCACTCCGAAGAATCTTCGAGGAGGGTTCACCACAGTTCACCAGCTGATGATTTGCCTTGGTGTGTC CTTCACTTATCTAATTGGTTCCTTCGTCTCGTGGCGAACCTTAGCACTCATAGGAACTGTTCCTTGCATAATCCAGCTCTTGGGACTGTTCTTCATCCCT GAATCTCCTAGATGGATGGCAAAAGTTGGCAGAGGGAAAGAATGTGAATCTGCTCTACAGAAGCTGAGAGGGAAGGAATCTGACATTTCTGATGAAGCAG CTGAAATAAGAGATTATACTGAGACTGTTCAGAGGCTTAATGAAGCCAGCAGCATGTTTGAGTTGTTCCAATGGAAATATGCTCATTCTCTCCTTGTTGG AGTTGGGTTGATGGTGCTTCAGCAATTCGGAGGTGTCAATGCCATTGCGTTCTACGCAAGTTCGATATTCGTATCAGCCGGATTCTCTGGTAGTATTGGA ACAATAGCAATGGTTGTTGTTCAGATACCAATGCAAGTAGTAGGAGTTGTCCTGATGGATATCTCGGGACGAAGGCCGCTTCTGATGGCAAGAAACATCA CCCTAATCAATCACAAATTGGTTTCTGCAGCAGGAACCTGCTTGGGTTGTTTCCTTGTAGCACTGTCATTCCTGCTTCAGGGTCTCCAAGTTTGGCAACA CATCTCTCCATTTTTCGCCCTTTTCGGTGTCCTGATGTTTACAGGTTCATTTTCACTAGGCATGGGAGGGATACCATGGGTCATAATGTCTGAGGTGTTC CCAATAAACATGAAGGGAACAGCAGGGAGCCTAGTGACATTGGTCAGCTGGTTAGGGTCTTGGATTGTTTCCTATGCTTTCAACTTCATGATGGGTTGGA GCTCTCCAGGAACATTCTTGATATTCTCATGCATTGGTGGGGTGACGGTTGTTTTTGTGATGAAGTTGGTCCCTGAGACCAAAGGAAGAACACTTGAGGA AATTCAGGCTTCCATGAACCCTTTGTTATGGGAATAG
AA sequence Show only first row Show all	>Lus10035354 pacid=23170531 polypeptide=Lus10035354 locus=Lus10035354.g ID=Lus10035354.BGIv1.0 annot-version=v1.0 MEEAEISTSLIEKQNGSSSSSAASSILILSIMVAVSGSYVFGTAIGYSSPTQSGIMDDLSLSVAEYSLFGSILTIGAMIGAVMSGRIADYIGRRGLMAFS EAFCILGWLAIAFAKVTWWLDAGRLLVGYGMGLLSYVVPVFIAEITPKNLRGGFTTVHQLMICLGVSFTYLIGSFVSWRTLALIGTVPCIIQLLGLFFIP ESPRWMAKVGRGKECESALQKLRGKESDISDEAAEIRDYTETVQRLNEASSMFELFQWKYAHSLLVGVGLMVLQQFGGVNAIAFYASSIFVSAGFSGSIG TIAMVVVQIPMQVVGVVLMDISGRRPLLMARNITLINHKLVSAAGTCLGCFLVALSFLLQGLQVWQHISPFFALFGVLMFTGSFSLGMGGIPWVIMSEVF PINMKGTAGSLVTLVSWLGSWIVSYAFNFMMGWSSPGTFLIFSCIGGVTVVFVMKLVPETKGRTLEEIQASMNPLLWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	1.0	0.9556
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	1.4	0.9051
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	7.3	0.8509
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	9.7	0.8399
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10025889 [exp]	11.5	0.8676
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013122 [exp]	11.8	0.8904
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	12.6	0.8863
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	13.9	0.8398
AT4G27120			unknown protein		Lus10011161 [exp]	15.9	0.8975
					Lus10012945 [exp]	16.0	0.8609

Compare expression of checked genes

Lus10035354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.