Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27360 219 / 4e-67 SFP2 Major facilitator superfamily protein (.1) AT3G05165 215 / 8e-66 Major facilitator superfamily protein (.1.2.3.4.5) AT5G27350 212 / 1e-64 SFP1 Major facilitator superfamily protein (.1) AT3G05160 211 / 2e-64 Major facilitator superfamily protein (.1.2) AT1G08920 211 / 2e-64 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05155 197 / 1e-60 Major facilitator superfamily protein (.1) AT3G05400 200 / 5e-60 Major facilitator superfamily protein (.1.2) AT2G48020 199 / 1e-59 Major facilitator superfamily protein (.1.2) AT1G08890 198 / 2e-59 Major facilitator superfamily protein (.1) AT1G08930 195 / 5e-58 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029962 [exp] 375 / 2e-127 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 348 / 2e-118 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 315 / 1e-103 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 313 / 3e-103 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 271 / 1e-86 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 259 / 2e-80 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029965 [exp] 248 / 4e-80 AT4G04750 283 / 2e-92 Major facilitator superfamily protein (.1) Lus10033812 [exp] 214 / 2e-65 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 202 / 1e-60 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037000 [exp] 229 / 6e-71 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 226 / 9e-70 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 224 / 3e-69 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 211 / 3e-64 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 209 / 2e-63 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 200 / 6e-60 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 190 / 3e-56 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 186 / 1e-54 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 182 / 3e-53 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G259900 [exp] 164 / 3e-46 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035355 pacid=23170474 polypeptide=Lus10035355 locus=Lus10035355.g ID=Lus10035355.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAAAACAATGCTTGCATGAGAAGTTACTTCATCCGGAGTCAGTCGCCATCGACGTCAACGTCAATGACGACTCTGCCAGTAGTAGTGGAG GCGGCGGCGGTGGGTCGACACCAACTCTCGTGTTGAGCACCATGGTTGCCCTCTGCGGTGCCTTCGCTATGGGTTGCGCCTCAGGATACTCATCACCAGC TGGGAATGGGATCATGAAGGACCTTTATCTCTCTGTTTCACAATTCTCTGTTTTCGGTTCAATAATGACGATTGGAGGGATGATCGGCTCGATAATCAAC GGGAAGATGGCCGATAGAATCGGCCGAAAACGCACAATGTGGGTATCTGAGCTGTTCTTTATCCTTGGTTGGTTAGCCATAGCATTTGCTAAGGATTCAT TGGCTTTGGACCTTGGAAGGTCTTCAATTGGAATTGGAGTTGGGATTGCTTGCTATGTGGTGCCAGTTTATATTGCAGAGATCACTCCGAAGAACATTCG GGGCGCTTATACATCTACTTGCCATTTTATGTCAATGTGTGGCTGCTCACTGCTCTACTTAGCTGGAACTTTGATCTCTTGGCGTTCTTTAGCTCTCATC GCTGTTGTGCCCTCAGCATTGCACATTGTTGGATTGTTCTTCATCCCCGAGTCGCCTAGATGGCTGGCTAAATCTGGGAGAGAAGAGGAGTTGGAGTTGG TACTTCAACAACTTAGAGGAAACAAAGCTGATATCACTCAAGAAGCAGCTGATATCACAGGTTTCACGGTGGCTTACTCGATAGGCATGGGTGGATTGCC CTGGCTAATCATGTCCGAGACATTTCCAATAAAGATAAAGGGAACAGCGGGGAGTCTAGTGACATTGATCTACTGGAGTTGCTCCTGGATAGTCACCTAT TCCTTCAATTTTCTCATGGAATGGAGCTCTGCAGGGACGTTTTTCATATTCGCTGGAATATCATGTGCTGCCGTTCTGTTCATTGCGAAATTGGTGCCGG AGACCAAGGGAAGAACTTTGGAAGAACTTGAGACTTCTTTCACTAGGTCTAGCGATATTGTTTACTAG
AA sequence Show only first row Show all	>Lus10035355 pacid=23170474 polypeptide=Lus10035355 locus=Lus10035355.g ID=Lus10035355.BGIv1.0 annot-version=v1.0 MEEEKQCLHEKLLHPESVAIDVNVNDDSASSSGGGGGGSTPTLVLSTMVALCGAFAMGCASGYSSPAGNGIMKDLYLSVSQFSVFGSIMTIGGMIGSIIN GKMADRIGRKRTMWVSELFFILGWLAIAFAKDSLALDLGRSSIGIGVGIACYVVPVYIAEITPKNIRGAYTSTCHFMSMCGCSLLYLAGTLISWRSLALI AVVPSALHIVGLFFIPESPRWLAKSGREEELELVLQQLRGNKADITQEAADITGFTVAYSIGMGGLPWLIMSETFPIKIKGTAGSLVTLIYWSCSWIVTY SFNFLMEWSSAGTFFIFAGISCAAVLFIAKLVPETKGRTLEELETSFTRSSDIVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	0	1
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	1.4	0.8643
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	2.0	0.8545
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	2.2	0.8415
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	2.4	0.8489
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	2.6	0.8362
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	3.5	0.8368
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	4.5	0.8081
					Lus10016424 [exp]	11.1	0.8437
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	25.3	0.7725
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	28.1	0.8157

Compare expression of checked genes

Lus10035355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.