Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 381 / 3e-128 Major facilitator superfamily protein (.1.2) AT1G54730 380 / 1e-127 Major facilitator superfamily protein (.1.2.3) AT1G08920 379 / 2e-127 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27360 363 / 6e-121 SFP2 Major facilitator superfamily protein (.1) AT5G27350 362 / 9e-121 SFP1 Major facilitator superfamily protein (.1) AT1G08890 358 / 5e-119 Major facilitator superfamily protein (.1) AT3G05400 357 / 6e-119 Major facilitator superfamily protein (.1.2) AT1G08900 356 / 1e-118 Major facilitator superfamily protein (.1.2.3) AT1G08930 356 / 4e-118 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G18840 353 / 7e-117 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029960 [exp] 748 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 597 / 0 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 592 / 0 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 546 / 0 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029963 [exp] 441 / 8e-153 AT1G54730 322 / 9e-107 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 407 / 5e-138 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 382 / 2e-128 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 362 / 9e-121 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 362 / 2e-120 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 429 / 1e-146 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 428 / 3e-146 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 420 / 4e-143 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 419 / 6e-143 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 377 / 3e-126 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 377 / 3e-126 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 370 / 1e-123 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 365 / 1e-121 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 355 / 8e-118 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 296 / 8e-95 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035356 pacid=23170598 polypeptide=Lus10035356 locus=Lus10035356.g ID=Lus10035356.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAATACTGGAGAGGCTACTTGCAGCAAGGTCCGTCGTCGCCGTCGACGTGAATCTGCCGCTGCCTATTAATGATGATGATCACGACGTTC TATCACCGTCGTCACGGCGGCCATACGGCGGCGGCGATCCCGAGGTGTGTCTGGCTGGTAATTTCTGCGGTGGCGATGGGGCGACTCCGGTGGTGGTGTT TAGTACCATGGTTGCCGTCTGCGGTGCCTTCGCTATGGGTTGCGCCTCAGGGTACTCATCACCAGCTGGGAAAGGAATCATGAAAGACCTCAATCTCTCT GTTGCACAATTCTCAGTTTTCGGTTCAATCATGACGATCGGAGGCATGACCGGCTCGATACTGAATGGGAAGATGGCCGATCAAATCGGACGAAAAGGCA CAATGTGGGTATCTGAGGTGTTCTTCATAATTGGTTGGCTTGCCATAGCATTTGCAGAGGATTCATCGACTCTGGACCTTGGAAGGGCTTCTGTTGGAGT TGGAGTTGGGATTGCTGGCTATGTGGTGCCAGTTTACATCGCAGAGATCACTCCGAAGAACATTCGCGGCTCGTACACATCTGCTAGCCATTTCATATCA TGCTGTGGATTCTCACTGCTCTATTTCGTTGGGACAGCCGTTTCATGGCGCACTCTGGCTCTCATTGCTGCTGTGCCATCTGCATTGCATATTGTGGGAT TGTTCTTCATTCCTGAGTCACCAAGATGGCTGGCTAAAGTTGGTAGAGAAGAGGACTTAGAATTGGTTCTGCAAAGACTAAGGGGAAATAAAGCTGATAT CACTGGAGAAGCAGCTGATATCACAGAGTCGATTCGGACATGTCAAGGGCGGAAATCGGCTAAGGTTCTTGAGCTGTTCCAGCTCAGATATGCTCATGCT ATCACGGTTGGTATGGGACTAATGATGTTCCAGCAATTTGGTGGGACTAATGCAATTGCGTACTATGCTAGGTCCATCTTTGAGGCAGCTGAATTTTCAA GTGACATTGGGTTGATATCAATGGCTATGATCCAAATCCCAATCACAGCTGTTTCAGTCATCTTGACCGACAAGTCAGGAAGGCGACCGCTTCTCTTGGT CTCTGCCTCAGGAATGTGCTTAAATTGCTTGCTTATAGGGATGGCATTTTTCCTTCAGGGCTATCACATTGCTAAGGACATCACCCCGACCCTTGTCTGC ACTGGAATCTTGGGTTTCACGGTATCTTACTCGATCGGGATGGCCGGATTGCCATGGCTAATCATGTCTGAGACATTTCCCATAAACATAAAGGGGACAG CTGGGAGTCTAGTGACATTGATGCACTGGTGCTGTTCATGGATTGTCACTTACTCCTTCAATTTCCTCCTTCAATGGAGTTCTTCAGAACTGGAAATGGA AAGGCATGGTCGGAGTGAAGAAGCTGGGGCACGGAACACGCATGTCCGTGCTTCCTCCGTGCGAGTGAAAGGACACGGAAGACGCACGGCTGTGCGTCCT CCGTGCGAGTGA
AA sequence Show only first row Show all	>Lus10035356 pacid=23170598 polypeptide=Lus10035356 locus=Lus10035356.g ID=Lus10035356.BGIv1.0 annot-version=v1.0 MEEEILERLLAARSVVAVDVNLPLPINDDDHDVLSPSSRRPYGGGDPEVCLAGNFCGGDGATPVVVFSTMVAVCGAFAMGCASGYSSPAGKGIMKDLNLS VAQFSVFGSIMTIGGMTGSILNGKMADQIGRKGTMWVSEVFFIIGWLAIAFAEDSSTLDLGRASVGVGVGIAGYVVPVYIAEITPKNIRGSYTSASHFIS CCGFSLLYFVGTAVSWRTLALIAAVPSALHIVGLFFIPESPRWLAKVGREEDLELVLQRLRGNKADITGEAADITESIRTCQGRKSAKVLELFQLRYAHA ITVGMGLMMFQQFGGTNAIAYYARSIFEAAEFSSDIGLISMAMIQIPITAVSVILTDKSGRRPLLLVSASGMCLNCLLIGMAFFLQGYHIAKDITPTLVC TGILGFTVSYSIGMAGLPWLIMSETFPINIKGTAGSLVTLMHWCCSWIVTYSFNFLLQWSSSELEMERHGRSEEAGARNTHVRASSVRVKGHGRRTAVRP PCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	0	1
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	1.0	0.8901
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	3.0	0.8401
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	3.7	0.8234
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	8.5	0.8479
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	9.4	0.8232
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	11.2	0.8028
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	14.5	0.8281
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	16.4	0.8357
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10037329 [exp]	16.4	0.7530
					Lus10026092 [exp]	17.6	0.8197

Compare expression of checked genes

Lus10035356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.