Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04560 479 / 8e-168 AtLpxB lipid X B, transferases, transferring glycosyl groups (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029959 [exp] 711 / 0 AT2G04560 535 / 0.0 lipid X B, transferases, transferring glycosyl groups (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160300 [exp] 534 / 0 AT2G04560 556 / 0.0 lipid X B, transferases, transferring glycosyl groups (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF02684 [flax] [poplar] LpxB Lipid-A-disaccharide synthetase
Representative CDS sequence Show only first row Show all	>Lus10035357 pacid=23170491 polypeptide=Lus10035357 locus=Lus10035357.g ID=Lus10035357.BGIv1.0 annot-version=v1.0 ATGCTATTGAGAGCCTTCGGCGCAGCGAAGAATTATCATCCCGCTTGCGCAGGTCTTTCATGGCTCCACATAAGAAGGCATTTCTCAGTTTCCAGCTCCG CCGCCAAAGATGGAGAGCTGAGAGTTTTCCTCGTTGCCGGCGAGGTTTCAGGCGACGCCATCGGCTCTCGCCTCATGAGTTCCTTGAAGAAGCTCTCTCC CTTTCCCGTCCGCTTCTCTGGCGTTGGCGGGTCAATGATGTGCAAAGAAGGTCTGGAATCTCTATTCCCAATTGAAGATATCTCAGTAATGGGTCTATGG GAGTTGCTACCTCATCTGAACAAGTTCAGGGTCAGATTGAGAGAAACGGTTGATGCAGCTGTTCTGTTTCGGCCGCATTTTGTAGTGACAGTTGATTCCA AGGGGTTCTCTGTCCATTTCCTGAAGCAGCTAAGAGGATCGTCTAAGAGTCCAGTACACTTCCATTACGTTGCCCAGTCGTTCTGGGCTTGGAAAGCGGG TGAAGCGAGGCTGAAGGGACTAACTGGGTTTGTGGATCATCTGTTCTGCATACTTCCAAATGAAGTGGCAATTTGTCTGCTCAATGGACTTGCTACAAAG TTCGTTGGACACCCGGTTCTGGAAGATCTGTTGGACTTAAACTCGGGAAAGCAAGAATGGAGGATACAGGGAAATCCTGACGATTTTCTGAGTAGATTTG GGATATCTAAAGATGCCAAAGTCATCTCATTGCTTCCTGGAAGCCGATTACAAGAGGTTACTCGGATGCTTCCTATCTTCAGAAAGGCCATGGATGAGCT CCAACACTCCTTTTCCGATTTATTCACAGTCATTCACGTCGCACCTAATCAGGATGTGGAAGATTTCGTTGGTAGAGTTGTCAACAAATGGCCAGCACCT GCTGTTTTGGTTCCAGGAGGAGACTCCATTCTCAAATATGATGCATTTAGCGCAAGCAAAGTTGCGCTGTGTACTTCAGGAACAGTAGCTGTGGAATTGC AGCTTGCGTGGCTGCCTTGTGCAGTAGCTTATCGAGCTCATATCCTGACCGAATGGTTCGTTCGGCACAAGGCAAAGATACAGTCTATCTCACTTTCCAA CATTCTCATGGATTCTCCTGCCGTTCCTGAATCTCTGTTTCAATCATGCACACCAACCAATCTCGCTGCAATACTCGCGGAACTCCTCGTCCGGGGACGA GAAACGCCAGCAGGAGGAACAGATTGCAGCTGCCGAGAAAGTAATCAGGCTCCTGTTTCCTCCCGGAGAGAATTCTCGAAACCTCGGATGTTCATGAAGA TGCAGAATGGCATTCCTCTCATTGCTCTCCGAGTATGA
AA sequence Show only first row Show all	>Lus10035357 pacid=23170491 polypeptide=Lus10035357 locus=Lus10035357.g ID=Lus10035357.BGIv1.0 annot-version=v1.0 MLLRAFGAAKNYHPACAGLSWLHIRRHFSVSSSAAKDGELRVFLVAGEVSGDAIGSRLMSSLKKLSPFPVRFSGVGGSMMCKEGLESLFPIEDISVMGLW ELLPHLNKFRVRLRETVDAAVLFRPHFVVTVDSKGFSVHFLKQLRGSSKSPVHFHYVAQSFWAWKAGEARLKGLTGFVDHLFCILPNEVAICLLNGLATK FVGHPVLEDLLDLNSGKQEWRIQGNPDDFLSRFGISKDAKVISLLPGSRLQEVTRMLPIFRKAMDELQHSFSDLFTVIHVAPNQDVEDFVGRVVNKWPAP AVLVPGGDSILKYDAFSASKVALCTSGTVAVELQLAWLPCAVAYRAHILTEWFVRHKAKIQSISLSNILMDSPAVPESLFQSCTPTNLAAILAELLVRGR ETPAGGTDCSCRESNQAPVSSRREFSKPRMFMKMQNGIPLIALRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	0	1
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	1.4	0.9055
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	4.2	0.9053
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	5.3	0.9093
AT1G73020			unknown protein		Lus10009732 [exp]	5.9	0.9002
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	6.0	0.9039
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	6.3	0.8907
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	6.8	0.8710
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	6.9	0.8942
AT3G47630			unknown protein		Lus10023597 [exp]	8.8	0.8938
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10025488 [exp]	12.0	0.8191

Compare expression of checked genes

Lus10035357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.