Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32900 843 / 0 ATZW10 centromere/kinetochore protein, putative (ZW10) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029956 [exp] 1374 / 0 AT2G32900 860 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223600 [exp] 973 / 0 AT2G32900 972 / 0.0 centromere/kinetochore protein, putative (ZW10) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06248 [flax] [poplar] Zw10 Centromere/kinetochore Zw10
Representative CDS sequence Show only first row Show all	>Lus10035358 pacid=23170470 polypeptide=Lus10035358 locus=Lus10035358.g ID=Lus10035358.BGIv1.0 annot-version=v1.0 ATGGACGCTCTTTTCGACGCGATCAACGCCCGCGATCTCCTCCCCGCCGGCGACCTGACGGACCAAACGTCCCCGCTCTCCGCGCCCGATCTTCGCCTCC TCATCACTCGTCTCGACTCTCACTCGCTCCAGATTAAATCCAAGGTCCAATCCTATCTCACCGCGCACCACGGTGACTTTTCGGCACTCTTCCAGCTCTG CAATGATGCCGTCTCCCGGACAGAAGAGATCAACAGGAAGGTATCTGATCTCTCGTCTATTTTATCCGACACTCCCGTCGACGTCGGAATTAGGGAGATC CTCGAGGAGCTGAACCGGAAGCTGAGCGAGGCGAAGGTGAAGAAAGAGTTGCTACAGTTGGTGAACGCAATTGTGGATATTAGCGAGAGGCTGAGTGCTG TGAGGGAAGCGGTGAAGAATGGGAAGTTGATCGTTGCTGCTGAGGAAATGAAGGAGCTGAAGGTTGTGTTGAGGATTGGCAATGAGGAGGATGGAGATCC CTTGGTGTATGGATTGCTGAAGAAGGAATGGCTGGCCTGCTTCGATGGGATTCAAGATATGCTTGTAAAATTCATGGAGAAAGGAGTGCAACTGGAGCCA GAATCAAGTACAGTTCGAGTTCGTCATCAGTTGAGTCTTGATGAACTTGAAGGAGTGGAACTCAAAGCTGTGTTGCAAGCAATGGAAGTGGTTGGGATAT TAGATTACGGGCTTGCAAAGGTAGCTGACAAGATGGTCAAGTTTGTTATCGCACCTGCCATGAACTGTAGCACAACTACTTCCTTCGCTGAAGAGGTTAA AGAAAGATCTGAAGGTTTGACAGAAGCAATATTGAAAACTGTACCATCATCTGATTTTAAGACTGAAGATGTGGATGGCCAGAGAATTTATTCCAGCGTT CTTCAGGTTGTGAAGTTTATATCAAAATGCATATGCCTAGAAAAGGAATCATGGGTCCGGTGTTTTGGAAGATTGGCTTGGCCTAGGATATCTGAGCTGA TTGTTTCTAATTTCCTCTCGAAGGTTGTTCCCAAGGATGCTGCAAACTTGGCCAGCTTTCAGATGATCATAAAAAACACGTCAGAGTTTGAAAACGCTTT AAAAGACTTGATGTTCATATCAGCTTCTCATAAGCCAGATCTAAAGTTGAGCAACTTTGCTGAAAATGTTGAAGTTCATTTTGCTTCTCGGAAAAAGATT GAAATATTGGCTAAGGCCAGAAATTTCCTCTTACACTGTGACTTCTCTATTCCACAAGAGTATCTGAGAAAGAGTTCTCAATCAAAGAACAGAGCAGGAA TCGATGCAGGCTCTACAGAGCTGCTTGTTCATTTGCTATTCATGTCTGAGAGTTGTGTGGTCTCAACAGCAGCTTCACAGCTGATGGCTCTAGTTCATCA GACACTCAAGGATGTTTGCTTATCATCTCCGAAAGTTGCACCTGAATTCTATCGTGCTGCTAGAGACGCAATACTTCTGTATGAAGCAATCATTCCTGTC AAGCTAGAAAGGAAGCTTGATAACTTTGACCAAGCCGCTGTTCTAATGCACAACGACTGCCTTTATGTATCTCAAGAGATACTTGGATTGGCATTTCAGT ATCGACCAGACTTTCCAATGTCCATCAAAGAACATGCTGTTTTCGTCGACATGGCTCCAAGATTTCAAGTAATGGCTGACAAGATACTGCAACAACAAAT CCAGCTCGTCATTCGTAATCTGAAAGAGGCTATTGATGGCGCTGGTGGTTTCCAAAACTCTCATCTGATGCAACAGTTTGAATCTGCAAAGTTTAGCATA GATCAGATTGTATTTGTCCTCGAAAAAGTGCGGATTATATGGGAGCCTCTATTACTACCTTCCACTTATAAGAAGAGCATGTGTGCGGTTCTGGAGTCTG TTCTTTCCAGAATCACAGTGGAGATTCTCCTTCTCGACGATATGGCTGCAGAGGAAACATTGCAGCTTCAAAGACTAATCCAGTTGATGCTGGAAGGCGT ATCTCCTTTGTTGGATTCCTTGCTTTCTGCTAAGGAGAAGCCTGAACAGAAATCTTCGAGACGAATCAACGATCTCATACCTTCTTTACGCAAGATTCGC AAGCTTGCAGGCAAGTTCTTCATTTCTAATTTCTGA
AA sequence Show only first row Show all	>Lus10035358 pacid=23170470 polypeptide=Lus10035358 locus=Lus10035358.g ID=Lus10035358.BGIv1.0 annot-version=v1.0 MDALFDAINARDLLPAGDLTDQTSPLSAPDLRLLITRLDSHSLQIKSKVQSYLTAHHGDFSALFQLCNDAVSRTEEINRKVSDLSSILSDTPVDVGIREI LEELNRKLSEAKVKKELLQLVNAIVDISERLSAVREAVKNGKLIVAAEEMKELKVVLRIGNEEDGDPLVYGLLKKEWLACFDGIQDMLVKFMEKGVQLEP ESSTVRVRHQLSLDELEGVELKAVLQAMEVVGILDYGLAKVADKMVKFVIAPAMNCSTTTSFAEEVKERSEGLTEAILKTVPSSDFKTEDVDGQRIYSSV LQVVKFISKCICLEKESWVRCFGRLAWPRISELIVSNFLSKVVPKDAANLASFQMIIKNTSEFENALKDLMFISASHKPDLKLSNFAENVEVHFASRKKI EILAKARNFLLHCDFSIPQEYLRKSSQSKNRAGIDAGSTELLVHLLFMSESCVVSTAASQLMALVHQTLKDVCLSSPKVAPEFYRAARDAILLYEAIIPV KLERKLDNFDQAAVLMHNDCLYVSQEILGLAFQYRPDFPMSIKEHAVFVDMAPRFQVMADKILQQQIQLVIRNLKEAIDGAGGFQNSHLMQQFESAKFSI DQIVFVLEKVRIIWEPLLLPSTYKKSMCAVLESVLSRITVEILLLDDMAAEETLQLQRLIQLMLEGVSPLLDSLLSAKEKPEQKSSRRINDLIPSLRKIR KLAGKFFISNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10035358 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	11.8	0.7663
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	12.9	0.7673
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	13.3	0.7630
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	16.1	0.7517
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	19.1	0.7561
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	24.2	0.7513
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	26.5	0.7274
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	30.8	0.7283
AT1G73430			sec34-like family protein (.1....		Lus10001792 [exp]	32.4	0.7360
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	33.5	0.6792

Compare expression of checked genes

Lus10035358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.