Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 220 / 3e-69 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029955 [exp] 258 / 6e-84 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 231 / 4e-77 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 231 / 2e-75 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 224 / 2e-73 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10016751 [exp] 228 / 2e-72 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032037 [exp] 98 / 2e-26 AT3G48560 96 / 3e-23 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 228 / 1e-72 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 223 / 8e-71 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Lus10035359 pacid=23170494 polypeptide=Lus10035359 locus=Lus10035359.g ID=Lus10035359.BGIv1.0 annot-version=v1.0 ATGAATGTTCAGGAGCTGGCGACGATCCGAGTCGAGAACTTGCCGGTGAAGATTATGATACTGAACAACCAGCATTTGGGGATGGTGGTTCAGTGGGAGG ACAGGTTTTACAAGGCGAACAGAGCGCATACGTTTCTGGGGAATCCTGCGGGGGGAGAAGAGGAGATTTTTCCGAACATGTTGAATGTCGCTGAGGCTTG TGGGATACCGGCGGCGAGGGTGAGTAAGATCGGCGAGGTTAGGGAAGGGATTAAGAAGATGTTGGAGACTCCTGGGCCGTATTTGTTGGACGTGATTGTG CCTCATCAAGAACATGTTCTGCCGATGATTCCGAGTGGTGGTGGGTTTAAGGACGCCATTACTGAAGGAGATGGCAGGAGTGAGTATTAG
AA sequence Show only first row Show all	>Lus10035359 pacid=23170494 polypeptide=Lus10035359 locus=Lus10035359.g ID=Lus10035359.BGIv1.0 annot-version=v1.0 MNVQELATIRVENLPVKIMILNNQHLGMVVQWEDRFYKANRAHTFLGNPAGGEEEIFPNMLNVAEACGIPAARVSKIGEVREGIKKMLETPGPYLLDVIV PHQEHVLPMIPSGGGFKDAITEGDGRSEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	1.4	0.9207
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	4.2	0.8764
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	4.4	0.8521
AT5G35732			unknown protein		Lus10006404 [exp]	4.6	0.8821
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	5.5	0.8848
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	6.0	0.8646
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	7.2	0.8780
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	7.5	0.8735
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	7.9	0.8731
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	10.0	0.8264

Compare expression of checked genes

Lus10035359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.