Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04980 523 / 0 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 505 / 8e-178 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 149 / 6e-41 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT3G54960 92 / 6e-20 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G21750 91 / 3e-19 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 90 / 4e-19 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 87 / 3e-18 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G35620 81 / 4e-16 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT1G76760 70 / 8e-14 ATY1, TRX-Y1 thioredoxin Y1 (.1) AT3G15360 69 / 2e-13 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031522 [exp] 535 / 0 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 524 / 0 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10034528 [exp] 256 / 2e-83 AT1G04980 268 / 8e-89 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029954 [exp] 207 / 3e-65 AT1G04980 157 / 9e-47 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10034529 [exp] 147 / 2e-42 AT1G04980 130 / 1e-36 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10010274 [exp] 150 / 5e-41 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 147 / 5e-40 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10020691 [exp] 134 / 5e-35 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10018156 [exp] 88 / 2e-18 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160000 [exp] 551 / 0 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.014G122800 [exp] 147 / 4e-40 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 146 / 1e-39 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.005G179000 [exp] 86 / 6e-18 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 86 / 7e-18 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 85 / 2e-17 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.019G082400 [exp] 84 / 3e-17 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 78 / 3e-15 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.001G401500 [exp] 71 / 7e-14 AT3G15360 171 / 2e-54 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.011G120700 [exp] 70 / 8e-14 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10035360 pacid=23170464 polypeptide=Lus10035360 locus=Lus10035360.g ID=Lus10035360.BGIv1.0 annot-version=v1.0 ATGGCAACAATGCAGCTTCGATCGACATCGGTGTCGTCGTTGTTCCTAGCGGCAATCTTGTTCCTTTTCTTCACATCCAACCTCTGTTACGCGCTGTACA CTGCTTCGACTCCGGTGGTTCAGCTCACTCCTTCCAACTTCAAGTCCAAGGTTCTGAACTCCAATGGAGTTGTCCTGGTTGAGTTCTACGCCCCTTGGTG TGGCCATTGTCAAGCTCTTACCCCAGCTTGGGAGAAAGCAGCCACAGTTTTGAAAGGTGTTGTCACCGTGGCAGCCCTTAATGCCGACGAGCACAAGTCT TTTGCTCAGGAGTATGGAATTAGAGGTTTCCCATCGATTAAGGTGTTTACCCCTGGCAAGCCACCGGGTGACTACCAAGGAGCTAGGGAGGCCAAACCAA TAGTGGATTTTGCAATCAAACAGGTAAAGGCACTTCTCAAGGACCGGTTGGATGGAAAATCAACCAGTGGTTCCAGTGAGAAATCTGAACCGAATGCGTC GGTAGAGCTGAACTCCCGTAACTTCGATGAGTTGGTGATCAAAAGTAAGGAACTTTGGATCGTGGAATTTTTTGCACCTTGGTGTGGACACTGTAAAAAC TTGGCTCCTGAGTGGAAGAAGGCAGCTGCTAATTTGAAGGGGAAGGTGAAGCTAGGTCATGTAGACTGTGATGAAGAGAAGTCTCTAATGAGCAGGTTCA AAGTTCAAGGATTTCCAACGATCTTGGTATTCGGAACGGATAAAGACAGTCCGTTAACATACGAGGGTGCTAGAACAGCCTCACCCATCTNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCTGTTTCGTATCGTTCCTGCCTGATATCTTGGACTCCAAGG CAGAAGGAAGGAACAAGTATCTTGACCAATTACTATCAGTTGCAGAGAAGTTCAAAAGAAGCCCATACAGGCAAAGCCATTCTCCTCCCTCCCTTTCTAA ATATCTCGGAATCTTTTCCTAACAACAGAAAATTGTTAACAATCTCTGTAATCCTCCTCTGCAGCTATGTGTGGGTTGCTGCTGGGAAGCAACCGAACCT CGAAAAGAGCGTTGGTGTCGGTGGGTATGGGTATCCAGCTCTTGTAGCATTGAACGTGAAGAAAGGAGTCTTCGCTCCGCTTAAAAGTGCCTACGAGCTC GAACACATCAGAGAGTTTGTGAAGGAAGCAGGGAGAGGTGGGAAGGGGAACCTGCCATTGGAAGGGACACTAGAGATCGTGAAAACAGAGCCATGGGATG GTAAAGATGGGCAGATCATGGAAGAAGATGAGTTCTCCCTCGAAGAGTTGATGGGCGACGAGGATCAGACCGCGGCCAAAGACGAATTGTAA
AA sequence Show only first row Show all	>Lus10035360 pacid=23170464 polypeptide=Lus10035360 locus=Lus10035360.g ID=Lus10035360.BGIv1.0 annot-version=v1.0 MATMQLRSTSVSSLFLAAILFLFFTSNLCYALYTASTPVVQLTPSNFKSKVLNSNGVVLVEFYAPWCGHCQALTPAWEKAATVLKGVVTVAALNADEHKS FAQEYGIRGFPSIKVFTPGKPPGDYQGAREAKPIVDFAIKQVKALLKDRLDGKSTSGSSEKSEPNASVELNSRNFDELVIKSKELWIVEFFAPWCGHCKN LAPEWKKAAANLKGKVKLGHVDCDEEKSLMSRFKVQGFPTILVFGTDKDSPLTYEGARTASPIXXXXXXXXXXXXXXXXXXXXXXRSVSYRSCLISWTPR QKEGTSILTNYYQLQRSSKEAHTGKAILLPPFLNISESFPNNRKLLTISVILLCSYVWVAAGKQPNLEKSVGVGGYGYPALVALNVKKGVFAPLKSAYEL EHIREFVKEAGRGGKGNLPLEGTLEIVKTEPWDGKDGQIMEEDEFSLEELMGDEDQTAAKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	0	1
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	4.1	0.7469
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10037739 [exp]	5.5	0.7729
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	6.3	0.7837
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10036069 [exp]	11.7	0.7916
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	11.7	0.7976
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022328 [exp]	14.7	0.7627
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	21.2	0.7693
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	28.8	0.7361
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	28.9	0.7842
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	29.4	0.7203

Compare expression of checked genes

Lus10035360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.