Plant FIBer expression Database

Lus10035363 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04560 182 / 6e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022011
[exp]
275 / 2e-92 AT3G04560 465 / 3e-163 unknown protein
Lus10042552
[exp]
271 / 2e-90 AT3G04560 465 / 2e-163 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G044600
[exp]
178 / 2e-54 AT3G04560 434 / 4e-151 unknown protein
PFAM info
Representative CDS sequence
>Lus10035363 pacid=23170580 polypeptide=Lus10035363 locus=Lus10035363.g ID=Lus10035363.BGIv1.0 annot-version=v1.0
ATGGATGATGATGCCGAGGAAGCTGCAACCCTGGAAGAAGATGAAACTAGGACAACTAATGGAGATGAAAATTTTGAGCGAGACGATGCATCGGGTGCGA
CACCAGTAGAAGAAACTGACAAGATTGAGTCTGATCCATTTGGACTTGACGCATTTATTCCAAGCACAATGAAGAAAGATGCGAAGATAAAGGCAAAAGG
ATCCAAGACCAAAACAAGAAAGAAAGAGGAGGACAGCGAGTTTGACAGATTTCTCAAATGTCAAAGAGAAGCCTTAATCTCTTGCTTAGAGATTGCTGCT
CGGCGATACAAGACACCTTGGTGCCAGACAGTGATGGATATTCTAGTGGAGCACGCCCATGATAACGCCGAGAGTTTTACGTCTCGACAAATAGATGCCA
TCGAGAAGATCTGGGCTTCAATTCGGAAACAACGCATTCGTAGGAAGCAAGGCAAGTCTATGAATGGGAAGCTTGATGTTACTGCTTTCGAGTCGCTGCA
GGAGAAGTACTCGACGGAGAAAATCAGTATTCAGAATGCGGTAGGTTGTGGTGGAGAACGCAAAGCCCAACAATGGCTTGGATGA
AA sequence
>Lus10035363 pacid=23170580 polypeptide=Lus10035363 locus=Lus10035363.g ID=Lus10035363.BGIv1.0 annot-version=v1.0
MDDDAEEAATLEEDETRTTNGDENFERDDASGATPVEETDKIESDPFGLDAFIPSTMKKDAKIKAKGSKTKTRKKEEDSEFDRFLKCQREALISCLEIAA
RRYKTPWCQTVMDILVEHAHDNAESFTSRQIDAIEKIWASIRKQRIRRKQGKSMNGKLDVTAFESLQEKYSTEKISIQNAVGCGGERKAQQWLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04560 unknown protein Lus10035363
[exp]
0 1
AT5G57015 CKL12 casein kinase I-like 12 (.1) Lus10008472
[exp]
1.0 0.8869
AT3G62930 Thioredoxin superfamily protei... Lus10029440
[exp]
3.9 0.7310
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Lus10022243
[exp]
9.5 0.6075
AT3G23880 F-box and associated interacti... Lus10010910
[exp]
13.2 0.7314
AT2G28630 KCS12 3-ketoacyl-CoA synthase 12 (.1... Lus10002190
[exp]
14.0 0.5698
AT5G05340 Peroxidase superfamily protein... Lus10009932
[exp]
14.3 0.7106
Lus10028050
[exp]
21.2 0.6973
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10018918
[exp]
26.2 0.6914
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10010373
[exp]
29.3 0.6954
Lus10022573
[exp]
30.3 0.6882

Lus10035363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.