Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17880 133 / 3e-38 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 124 / 5e-35 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 123 / 1e-34 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 91 / 4e-23 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G00870 50 / 2e-08 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 47 / 2e-07 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G24140 37 / 0.0003 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000037 [exp] 174 / 6e-57 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 175 / 2e-53 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 157 / 1e-47 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 158 / 5e-47 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 157 / 8e-47 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 70 / 1e-15 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10016680 [exp] 39 / 0.0001 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 39 / 0.0001 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10007138 [exp] 37 / 0.0003 AT3G24140 124 / 2e-34 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142200 [exp] 141 / 6e-41 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 135 / 1e-38 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 79 / 9e-19 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 76 / 1e-17 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 73 / 1e-16 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 68 / 7e-15 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 48 / 8e-08 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 46 / 3e-07 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.017G054500 [exp] 43 / 4e-06 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 41 / 1e-05 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035365 pacid=23170645 polypeptide=Lus10035365 locus=Lus10035365.g ID=Lus10035365.BGIv1.0 annot-version=v1.0 ATGGATATAGACGTGAAGATAATTGGGTGGGATGCGATGATTAGAATACAATGCAGCAAGGAGAACCATCCAGCAGCTAGACTGATGGCAGGGTTGAAAG AGCTGGACTTGGATGTACACCATGCTAGTGTTTCAGTGGTGAATGATTTGATGATACAGCAAGCTACTGTGAAAATGGGTAGTCGATTCTACACGCAGGA GGAGCTGAGGTTAGCATTGTCCAACAAAGTTGGTGGTGACACCAGATAG
AA sequence Show only first row Show all	>Lus10035365 pacid=23170645 polypeptide=Lus10035365 locus=Lus10035365.g ID=Lus10035365.BGIv1.0 annot-version=v1.0 MDIDVKIIGWDAMIRIQCSKENHPAARLMAGLKELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEELRLALSNKVGGDTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	0	1
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	1.0	0.9566
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	1.4	0.8948
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	2.2	0.8845
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	3.0	0.8572
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	3.5	0.8757
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	4.2	0.8911
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	5.7	0.8575
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10033649 [exp]	6.5	0.7734
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	8.5	0.8857
AT3G11760			unknown protein		Lus10013598 [exp]	14.5	0.8323

Compare expression of checked genes

Lus10035365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.