Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32640 290 / 1e-91 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 256 / 9e-79 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 242 / 1e-73 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 152 / 9e-41 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G01260 97 / 2e-21 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G09820 92 / 8e-20 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 92 / 1e-19 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G63650 84 / 4e-17 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 79 / 3e-15 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 77 / 5e-15 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030970 [exp] 634 / 0 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 398 / 7e-133 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 357 / 3e-117 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 249 / 4e-77 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 100 / 9e-23 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030212 [exp] 99 / 1e-22 AT4G00870 135 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 83 / 1e-16 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 82 / 2e-16 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024631 [exp] 82 / 2e-16 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142200 [exp] 360 / 3e-118 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 359 / 8e-118 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 121 / 7e-30 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 116 / 6e-28 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G083500 [exp] 101 / 6e-23 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 99 / 3e-22 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 94 / 2e-20 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 93 / 7e-20 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 92 / 1e-19 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 90 / 5e-19 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035366 pacid=23170592 polypeptide=Lus10035366 locus=Lus10035366.g ID=Lus10035366.BGIv1.0 annot-version=v1.0 ATGACAGAATACCGTCTCCAATCGCCGGCTACCATGAACCTCTGGACTGACGACAACGCTTCCGTCATGGAAGCCTTCATGAATTCTGATCTCACCTCCC TCTGGCCCCCTACTCCTCTCCCTCCTCCCCCTCCTCCACACTCCTCCGCCTCCACCTCCGCCGCCGAAGGTGGCGCCACAGTCAATCAAGACTCCCTCCA GCAGCGCCTCCAGGCCCTAATCGACGGCGCCAGAGAGAACTGGACCTACGCCATCTTCTGGCAGTCCTCCTACGATTTCTCCGGCGCCTCCTCCTCCTCC TCCACCGTCCTAGCTTGGGGCGACGGTTACTACAAGGGCGACGAACAAAAGGGCAACACCACCGCGAAATCGAGTACCCGAAATTACACCCCGGCAGAGC AGGAACACCGCAAGAAAGTACTCCGCGAGCTCAATTCGCTGATCTCCGGCCCTAATTCCGCCTCGGACGACGCAGTCGACGAGGAGGTTACGGACACCGA GTGGTTCTTCCTCGTCTCCATGACCCAGTCGTTCGTGAACGGAGTCGGCTTGCCCGGACAGGCCTTCTTCAACGGGTCCCCCGCCTGGATTGTTGGGTCG GATCGGATGGCCGCCGCGTCCTGCGAGCGGGCCAAGCAAGGCCAGGTTTTCGGTCTCCAGACAATGGTCTGCATCCCCATGCAAAACGGCGTCGTCGAGC TCGGTTCCTCAGAGCTAATCCCTCAGAGCTCCGATCTCATGAATAAGGTTAGGGTTCTCTTCAATTTCAGTACCGTCGATCTCTCCACCGCTTGGCCGCA GTCGAATCCCGACCAGGGCGGCGAGAACGACCCTTCCTCACTCTGGATAAGCGACCTGACCCGCACCGACCCGCCTCAGAACGGATCATCCTACCCGAGT TCAAGTAGCTTGACGGAGACCCCTGCCGAAATCCAGAACCAGACGCAGGGCTTTTTCACTCGTGAATTGAACTTCGGCAATGGATCATTTGGGGGTAATC AGCCAAAGCCGGAATCTGGTGAGATACTGAACTTTGGAGATAACAGCAGCAAGAGGAGTTCCTCAAACCCTAATTTGAATCATCATAACCTTAACCCTCA ATTAGAAGACAATAACACGAACAAGAACAAGAAGAAGAAGCCATCTCCAACGTCAAGAGGCAGTAACAACGATGAAGGAATGCTTTCCTTCACTTCAGGT GTTCTTCCTAGTTCAGGCAGTGTTAAGTCCAATGGAGGAGGAATGGTGGATTCAGACGTTGACCAATCTGATCTCGAACCTTCAGTGATTAAAGAAGTGG TGGGTGCGGAGCAGGAAAAAAGGCGGGGAGAGCGAGGGAGGAGGGGAGCTAAAGGCAGCGCAGAGCAGCAACAAGAAGGCGTGTAG
AA sequence Show only first row Show all	>Lus10035366 pacid=23170592 polypeptide=Lus10035366 locus=Lus10035366.g ID=Lus10035366.BGIv1.0 annot-version=v1.0 MTEYRLQSPATMNLWTDDNASVMEAFMNSDLTSLWPPTPLPPPPPPHSSASTSAAEGGATVNQDSLQQRLQALIDGARENWTYAIFWQSSYDFSGASSSS STVLAWGDGYYKGDEQKGNTTAKSSTRNYTPAEQEHRKKVLRELNSLISGPNSASDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPGQAFFNGSPAWIVGS DRMAAASCERAKQGQVFGLQTMVCIPMQNGVVELGSSELIPQSSDLMNKVRVLFNFSTVDLSTAWPQSNPDQGGENDPSSLWISDLTRTDPPQNGSSYPS SSSLTETPAEIQNQTQGFFTRELNFGNGSFGGNQPKPESGEILNFGDNSSKRSSSNPNLNHHNLNPQLEDNNTNKNKKKKPSPTSRGSNNDEGMLSFTSG VLPSSGSVKSNGGGMVDSDVDQSDLEPSVIKEVVGAEQEKRRGERGRRGAKGSAEQQQEGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	0	1
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	2.0	0.9227
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	2.0	0.9254
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	3.9	0.9154
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	4.6	0.9271
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	5.1	0.8984
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	6.2	0.9243
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	7.5	0.8970
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	8.3	0.8800
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	8.5	0.8857
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	11.5	0.9099

Compare expression of checked genes

Lus10035366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.