Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17760 429 / 1e-152 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030971 [exp] 577 / 0 AT4G17760 447 / 1e-159 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139100 [exp] 476 / 2e-171 AT4G17760 500 / 1e-180 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF02144 [flax] [poplar] Rad1 Repair protein Rad1/Rec1/Rad17
Representative CDS sequence Show only first row Show all	>Lus10035367 pacid=23170489 polypeptide=Lus10035367 locus=Lus10035367.g ID=Lus10035367.BGIv1.0 annot-version=v1.0 ATGAGCTCATCGGCGGTGGAGCCTGAAGGCCCCAATCTAGTTTGCCGGCTCGAGAACGTCCAAGGAATGGTCGACGCTCTCTCCGCTGTTCGATGGAGAC GCCATCAGGACGCAGTGGTAGAACTATCGGAGTATGGAATCGTCTTGATGCTGGAAGAGAGCAACTGTCTTCAAGCCAAACTTTTCATCCAATACGATTA CAATGCTGATGGAAGACCGCGTTTCGGAGTTAGCTTGGGCCTATTTTTTTATTGCTTAAGCACATTCTCTGTTCCTGAGCATCCTACCGCTATCGAGATT CGGTATCCTGGACCTGACATGCAGCTTCTTCTCAAGTCTGTTGAATCTTCAGATGCTTGCACCTATGCGGAGGTCAGGACAAGAATTCCAGAAAGTGTTT GTTGGGACTACAACTTCGAACCTGCAGGAAGCGTGCCATTAAGTTTTACTGTGAAGTCTGCAGCACTCAAAGAAGCTATTGATGATCTTGAGTGGCCTGG ATCCAGTATATGTATCAACCTGAAGCCAGTACCTCCATTCGTTTCATTTAGAGGAGAAGGGCATGGAGATTTACAGATTGATTTCGTTTATTACGTGAAC AGTGATCTCTTAATAGCCTTCAATTGCGACCGTGAAGTATCATACAGATACAAATACAAGTTCCTCCGAGCAACAACTTCCAACTTACCGAGCAGCGTCA TTAAAGAGAATCGAGCAAGCAAACTAACCATCGGAAAAGGAGGAATGTTGAAAGTTCAGTATTTGGTTTCAGTTGGAAGATCGCCCTTGTCACATCCACA TAATGATTCCACTGCCCATCAGCAACCTGCCCGAATCGGTTACATCGAGTTCTTTGTGAAACCCGAGGAAGATGAAAATGCAGGGGAATGA
AA sequence Show only first row Show all	>Lus10035367 pacid=23170489 polypeptide=Lus10035367 locus=Lus10035367.g ID=Lus10035367.BGIv1.0 annot-version=v1.0 MSSSAVEPEGPNLVCRLENVQGMVDALSAVRWRRHQDAVVELSEYGIVLMLEESNCLQAKLFIQYDYNADGRPRFGVSLGLFFYCLSTFSVPEHPTAIEI RYPGPDMQLLLKSVESSDACTYAEVRTRIPESVCWDYNFEPAGSVPLSFTVKSAALKEAIDDLEWPGSSICINLKPVPPFVSFRGEGHGDLQIDFVYYVN SDLLIAFNCDREVSYRYKYKFLRATTSNLPSSVIKENRASKLTIGKGGMLKVQYLVSVGRSPLSHPHNDSTAHQQPARIGYIEFFVKPEEDENAGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	0	1
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10022657 [exp]	2.0	0.8076
AT4G17085			Putative membrane lipoprotein ...		Lus10042735 [exp]	6.2	0.7826
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	7.3	0.8407
AT4G37810			unknown protein		Lus10028241 [exp]	11.6	0.7214
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	11.7	0.7991
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	12.0	0.8098
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	12.6	0.7476
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	13.0	0.8188
AT2G40435			unknown protein		Lus10017415 [exp]	17.0	0.7996
AT5G46850			unknown protein		Lus10030954 [exp]	17.3	0.7187

Compare expression of checked genes

Lus10035367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.