Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17920 167 / 7e-50 RING/U-box superfamily protein (.1) AT5G46650 160 / 4e-47 RING/U-box superfamily protein (.1) AT4G40070 111 / 5e-28 RING/U-box superfamily protein (.1) AT2G35420 104 / 3e-26 RING/U-box superfamily protein (.1) AT3G05200 107 / 4e-26 ATL6 RING/U-box superfamily protein (.1) AT2G35000 102 / 1e-24 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G72200 102 / 2e-24 RING/U-box superfamily protein (.1) AT4G09120 100 / 6e-24 RING/U-box superfamily protein (.1) AT5G27420 99 / 2e-23 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G32361 98 / 4e-23 ATL1F RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030972 [exp] 533 / 0 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10004572 [exp] 264 / 6e-87 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10000487 [exp] 248 / 6e-81 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10000333 [exp] 114 / 1e-28 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10036466 [exp] 114 / 2e-28 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10004460 [exp] 114 / 2e-28 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10015167 [exp] 107 / 9e-27 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10041134 [exp] 108 / 2e-26 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10029794 [exp] 107 / 6e-26 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140900 [exp] 190 / 1e-58 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 180 / 5e-55 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 115 / 4e-29 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 114 / 1e-28 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 94 / 4e-21 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 87 / 1e-19 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 83 / 3e-18 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 83 / 7e-18 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 80 / 2e-17 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 82 / 3e-17 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10035368 pacid=23170637 polypeptide=Lus10035368 locus=Lus10035368.g ID=Lus10035368.BGIv1.0 annot-version=v1.0 ATGCCGTCCGCTGAGTTCGATGCCACCGATGATTCTCTTCGACCATTGTTCCCGGCCCCGCCAGTAACAGTCATCTTGAGCACCACCCTCATCCTCCTCT TCCTTTTAGGCCTATTCTCCATCTACTTCTGTCGTTGCTTCCTCGAGAGTCTGATGGACAACTGGCATGAAGCCGGTCGAATCCCTAACCCTAGCATCCA CGGGATGGTGATAAATCCTCACCCTGGTGGTGAGGTCCCTAACCACGAAGAGCAAGGCCTCGACCCTTCCTTAATCAAGCGCTTCCCCACATTTTCGTAC TCTGATGTGAACGAGTTTCGAAAGGAGAAGTACGAATTGGAATGTGCCATTTGTCTCGCGGAATTTGAGGATGTTGATCTCATCCGCCTCCTCACAGTGT GTTACCATGTTTTTCATCTACCATGCATTGACCTCTGGCTCCAGTCTAACAAGACTTGTCCTGTATGTCGTCGAGATCTGGACCAGATCTCACACGACAA TCCTGAAAAAATCCCTCTTAATGCCATCAATCGCGATAGTGCCACTTTGGTTGAGGGTAACATAGATCTTCCCAATCATTCTATCACCGTCAACATTGAC AATCTAGATGGTCACAATGGCCATAGTGGTTCCAATGGAGATGGAGACGAGGAGGACTCTAGGGGAATGAGGACGAGCACATCGAAACAATTCGGGAGGT CCCACTCCACAGGGCATTCAATAGTCGTTTCGAGGTTATCGTTGGGAGGAGATCGCAAGGATGAGCAGGAGGATAGGTATACATTGAGACTAGTGAAAGA TGTGACGGTAAAGATGATCAATCCAGCCAGGAGACATTGTGCGACGGAGAGTTGTATCGTGTTTGGAGAATTATCTGGTGGTCCTCGAAATGACAATAAT GGTGGTAGCGTTATTAATTTTAGCCATGGAAGATTAGGTGAAGTACATGGAACTTCTACTACAGTAGTTAGTTGA
AA sequence Show only first row Show all	>Lus10035368 pacid=23170637 polypeptide=Lus10035368 locus=Lus10035368.g ID=Lus10035368.BGIv1.0 annot-version=v1.0 MPSAEFDATDDSLRPLFPAPPVTVILSTTLILLFLLGLFSIYFCRCFLESLMDNWHEAGRIPNPSIHGMVINPHPGGEVPNHEEQGLDPSLIKRFPTFSY SDVNEFRKEKYELECAICLAEFEDVDLIRLLTVCYHVFHLPCIDLWLQSNKTCPVCRRDLDQISHDNPEKIPLNAINRDSATLVEGNIDLPNHSITVNID NLDGHNGHSGSNGDGDEEDSRGMRTSTSKQFGRSHSTGHSIVVSRLSLGGDRKDEQEDRYTLRLVKDVTVKMINPARRHCATESCIVFGELSGGPRNDNN GGSVINFSHGRLGEVHGTSTTVVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17920			RING/U-box superfamily protein...		Lus10035368 [exp]	0	1
					Lus10005514 [exp]	3.5	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	5.1	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	6.2	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	7.2	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	7.7	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	8.8	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	9.5	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	9.8	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	10.8	1.0000
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	11.4	1.0000

Compare expression of checked genes

Lus10035368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.