Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 437 / 1e-154 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 429 / 2e-151 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 261 / 1e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 254 / 6e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 251 / 2e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 235 / 2e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 223 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 216 / 7e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 213 / 8e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 209 / 2e-65 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030973 [exp] 623 / 0 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10041651 [exp] 479 / 6e-171 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 476 / 2e-167 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10026385 [exp] 260 / 6e-85 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 256 / 1e-83 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 238 / 2e-76 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012930 [exp] 219 / 1e-69 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024138 [exp] 215 / 1e-67 AT2G33590 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 214 / 4e-67 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G045500 [exp] 476 / 7e-170 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 476 / 1e-169 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 474 / 3e-169 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 473 / 7e-169 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 461 / 7e-164 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 457 / 2e-162 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 318 / 6e-109 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 256 / 1e-83 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 255 / 5e-83 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G076300 [exp] 254 / 1e-82 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10035369 pacid=23170518 polypeptide=Lus10035369 locus=Lus10035369.g ID=Lus10035369.BGIv1.0 annot-version=v1.0 ATGCCAGCAGTAGCTGACACCTCATCCATCATCATCACCCCCCAGACAGTCTGCGTCACCGGCGCCGGCGGCTTCATTGGGTCATGGATCGTTAAACTTC TCCTCCACAGAGGCTACTCCGTCAGAGGAACCGTCAGGAATCCAGAGGATCCGAAGAATAGACACTTGAAAGAGCTAGAAGGATCCAATGAGCGGCTGAC CCTGTGGGAAGCTGACCTACTGGATTACGATGGTCTCCGACGAGCCATTGATGGATGTCACGGCGTTTTCCACACCGCTTCCCCCATCTCCGATGATCCT GACGAAATGCTGGAGCCGGCGGTGGACGGGACTAAAAATGTAATAATAGCAGCATCGGAAGCAAAAGTCCGGCGAGTTGTGTTCACGTCGTCCATCGGCG CCGTCTACATGGACCCCAACCGAAACCATGACGTGGAGATGGATGAGTCCTTTTGGAGCGATCTCGACTATTGCAAGAACACCAAGGTCAAGAACTGGTA CTGCTACGGCAAAACGGCAGCGGAGCTGAGAGCATGGAAGGTGGCGAAAGAGAAGGGTGTGGATTTGGTTGTTGTCAACCCTGTGGTTGTGGTCGGACCG TTGCTCCAACCAACTGTCAACGCTAGCAGCGTTCACATACTCAAGTACCTAGCCGGTTGGGTAAAAACCTATGCCAATGCAGTTCAAGGGTATGTTCACG TTAGAGACGTGGCACTAGCCCACATCCTCGTGTTTGAGAACATGTATGCATCTGGTCGCTACCTTTGCGTCGAAAGTGTCCTCCACCGAGGCGAGGTGGT TGAGATTCTCGACGAGTTGTTCCCCGGTTATCCCCTCCCAACCAAATGCAAGGACGAGAAGAGCCCCAGAGCCAAACCGCACAAGTTTTCGTGCCAAAAG TTGAAGGACATTGGACTGGAGTTCACACCGGTGAGACAGTGTTTGTACGACACAGTGAAATCCCTACAGGAACATGGTCATCTCGTTACTCTTCCAAAAC AAAAATTCGAAAAGTTGAGTCTTGAACCATGA
AA sequence Show only first row Show all	>Lus10035369 pacid=23170518 polypeptide=Lus10035369 locus=Lus10035369.g ID=Lus10035369.BGIv1.0 annot-version=v1.0 MPAVADTSSIIITPQTVCVTGAGGFIGSWIVKLLLHRGYSVRGTVRNPEDPKNRHLKELEGSNERLTLWEADLLDYDGLRRAIDGCHGVFHTASPISDDP DEMLEPAVDGTKNVIIAASEAKVRRVVFTSSIGAVYMDPNRNHDVEMDESFWSDLDYCKNTKVKNWYCYGKTAAELRAWKVAKEKGVDLVVVNPVVVVGP LLQPTVNASSVHILKYLAGWVKTYANAVQGYVHVRDVALAHILVFENMYASGRYLCVESVLHRGEVVEILDELFPGYPLPTKCKDEKSPRAKPHKFSCQK LKDIGLEFTPVRQCLYDTVKSLQEHGHLVTLPKQKFEKLSLEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10035369 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10030973 [exp]	3.7	0.7495
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	20.2	0.7003
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	22.2	0.7073
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	49.6	0.6722
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10033183 [exp]	56.0	0.6669
AT5G50360			unknown protein		Lus10038406 [exp]	63.9	0.6687
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	86.0	0.6607
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Lus10026505 [exp]	102.9	0.6181
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	110.6	0.5911
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	179.6	0.6082

Compare expression of checked genes

Lus10035369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.