Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67170 248 / 2e-81 unknown protein AT3G14750 148 / 8e-43 unknown protein AT1G55170 119 / 3e-32 unknown protein AT5G61920 108 / 3e-28 unknown protein AT2G30120 86 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030976 [exp] 444 / 4e-157 AT1G67170 294 / 1e-96 unknown protein Lus10038143 [exp] 147 / 2e-42 AT3G14750 275 / 1e-91 unknown protein Lus10019966 [exp] 137 / 5e-39 AT1G67170 137 / 3e-38 unknown protein Lus10037647 [exp] 133 / 3e-37 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 133 / 3e-37 AT1G55170 236 / 2e-77 unknown protein Lus10013698 [exp] 133 / 4e-37 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 131 / 3e-36 AT3G14750 288 / 2e-96 unknown protein Lus10015495 [exp] 130 / 5e-36 AT1G67170 139 / 1e-38 unknown protein Lus10015628 [exp] 127 / 1e-35 AT1G55170 211 / 3e-68 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109700 [exp] 292 / 5e-97 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 160 / 8e-48 AT5G61920 155 / 3e-46 unknown protein Potri.001G382700 [exp] 134 / 2e-37 AT3G14750 297 / 6e-100 unknown protein Potri.003G037900 [exp] 128 / 1e-35 AT1G55170 259 / 2e-86 unknown protein Potri.009G076700 [exp] 127 / 5e-35 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 124 / 9e-34 AT2G30120 161 / 4e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035371 pacid=23170671 polypeptide=Lus10035371 locus=Lus10035371.g ID=Lus10035371.BGIv1.0 annot-version=v1.0 ATGGCAAGTAAAGGTCGGATTCCACCTCCTCATATGCGGCGCCCTCTTCCGGGCCCTGAACCTATGCATCCTGCTGACCAGTTTGGTCTTGGAATGAGAC CTCCACCTGGTCCTTTTCCTCCATATGACATGTTACCTCCACGGGAGGTCTTGGAGCAGAAGCTTTCTGCACAGGAGATGGAGATGCAGAGACTTGCCAC AGAGAACCAAAGGCTTGCTGCTTCTCATGGGAGCTTAAGACACGAACTTGTTGCTGCTCAGCATGAGCTCCAGAGGCTGCATGCTCATGTACAATCGATC AGGGCAGAAAGAGAGCAACAGATGAAGGGGCTCTCCGATAAGACATCAAAGATGGAAAACGATTTGAAAGGTGCCGAGCCTATGAAGAAGGAGTTGCAGC AGGCACGGACAGAAGCTGAGAAGTTGGTTTCAGCTAGGCAGGAGCTTATGTCTAAAGTGCATCAGTTAAATCAGGAAATTCACAAAGCTCATGTGGAGGC GCAGCAAATACCTGCTTTAATGTCGGAACTAGAGGGTCTCAGACAAGAACAACAGCGATGCAGGCTTTCATATGACTATGAGAAGAAACTATTTCACGAT CATCTCGAATCTCTACAAGGAATGGAAAAGAACTATATGACAATGGCCAGAGAAGTGGAAAAACTTCGTTCTCAATTGGCTAATATAGCTGGGAACAGCG AGATTGAGGCTCCTGGTCCATGGCGTACTGGAGGACAAAGTATGTATGAAGATGGCTACGGTGTTCATCAAGGCCAGGTAAATTGCTAG
AA sequence Show only first row Show all	>Lus10035371 pacid=23170671 polypeptide=Lus10035371 locus=Lus10035371.g ID=Lus10035371.BGIv1.0 annot-version=v1.0 MASKGRIPPPHMRRPLPGPEPMHPADQFGLGMRPPPGPFPPYDMLPPREVLEQKLSAQEMEMQRLATENQRLAASHGSLRHELVAAQHELQRLHAHVQSI RAEREQQMKGLSDKTSKMENDLKGAEPMKKELQQARTEAEKLVSARQELMSKVHQLNQEIHKAHVEAQQIPALMSELEGLRQEQQRCRLSYDYEKKLFHD HLESLQGMEKNYMTMAREVEKLRSQLANIAGNSEIEAPGPWRTGGQSMYEDGYGVHQGQVNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67170			unknown protein		Lus10035371 [exp]	0	1
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	1.0	0.8815
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	8.8	0.7840
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	13.7	0.8012
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	15.7	0.8125
					Lus10013907 [exp]	17.3	0.8010
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	18.7	0.7889
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	21.6	0.7807
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10034396 [exp]	31.1	0.7314
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	34.6	0.7943
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	35.3	0.7989

Compare expression of checked genes

Lus10035371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.