Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 74 / 4e-16 Protein of unknown function (DUF1262) (.1) AT1G61600 72 / 2e-15 Protein of unknown function (DUF1262) (.1) AT1G13520 64 / 1e-12 Protein of unknown function (DUF1262) (.1) AT1G13500 63 / 3e-12 Protein of unknown function (DUF1262) (.1) AT1G13540 60 / 4e-11 Protein of unknown function (DUF1262) (.1) AT1G13490 57 / 2e-10 Protein of unknown function (DUF1262) (.1) AT1G13530 57 / 3e-10 Protein of unknown function (DUF1262) (.1) AT1G13550 54 / 3e-09 Protein of unknown function (DUF1262) (.1) AT1G13470 53 / 1e-08 Protein of unknown function (DUF1262) (.1) AT1G13510 52 / 3e-08 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035379 [exp] 190 / 4e-63 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 182 / 6e-57 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 61 / 2e-11 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 57 / 1e-10 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 52 / 2e-08 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 47 / 6e-07 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106100 [exp] 101 / 4e-26 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 77 / 3e-17 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 76 / 1e-16 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 76 / 1e-16 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 71 / 3e-15 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 59 / 5e-11 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 59 / 5e-11 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035372 pacid=23170559 polypeptide=Lus10035372 locus=Lus10035372.g ID=Lus10035372.BGIv1.0 annot-version=v1.0 ATGTTCAACACTGCGTATGGTAATGATGATGATGATACTAGTACGGAGGTGGTGGGCGCGGTGGTGAGCTTCAGGGTGGCCGTGGGAAGGAGAGCTGATA TGGTGTTTGGGAGAGAGGCAGCTATGGTGAGGCATGGCGATGGTCATCATGGTGGGATGGTGTTGTTTAGGAGTAAGATGGATAAGAGGGTTGTGATTGG GTTGAGTGTTGCAGTTGTGAAGAAGATTGAATGGGTGATGGAGGAAGGAGGGTGGCTTGATGATGGTGGTGATCAAAGGGTGGTTAGAGTTGAGGAGGAA GTTGAGATTGGGAACAATGGTTGGAGGAGATTCTGTTGCTATGTACTGGTTGAGAGCTTTGTTTTCAGGAGGATGGATGGGACTGTGGTTTTCAAGTCTG ATTTCAGGCATACCAATAACATCAAATGGAGATGGGATTAA
AA sequence Show only first row Show all	>Lus10035372 pacid=23170559 polypeptide=Lus10035372 locus=Lus10035372.g ID=Lus10035372.BGIv1.0 annot-version=v1.0 MFNTAYGNDDDDTSTEVVGAVVSFRVAVGRRADMVFGREAAMVRHGDGHHGGMVLFRSKMDKRVVIGLSVAVVKKIEWVMEEGGWLDDGGDQRVVRVEEE VEIGNNGWRRFCCYVLVESFVFRRMDGTVVFKSDFRHTNNIKWRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	0	1
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	1.0	0.9458
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	4.2	0.9018
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	4.9	0.8856
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	7.5	0.8802
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	8.9	0.8788
					Lus10040145 [exp]	10.0	0.8384
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	10.5	0.8689
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	11.0	0.8463
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	12.4	0.8773
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	14.3	0.8785

Compare expression of checked genes

Lus10035372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.