Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 278 / 6e-93 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 263 / 1e-86 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G32510 253 / 1e-82 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G65910 240 / 7e-74 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 223 / 2e-71 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 220 / 8e-70 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G17260 224 / 2e-69 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 224 / 4e-69 NAC ANAC045 NAC domain containing protein 45 (.1) AT4G35580 187 / 8e-55 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT2G18060 182 / 2e-54 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030978 [exp] 639 / 0 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10042284 [exp] 227 / 2e-72 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 227 / 3e-72 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 229 / 3e-69 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10010959 [exp] 228 / 4e-69 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10020794 [exp] 229 / 8e-68 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10017915 [exp] 184 / 1e-55 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10010148 [exp] 190 / 3e-55 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 189 / 4e-55 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089800 [exp] 332 / 1e-112 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 320 / 1e-107 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.015G030200 [exp] 224 / 6e-72 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 223 / 3e-70 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 218 / 7e-69 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.010G174600 [exp] 218 / 2e-68 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.004G081000 [exp] 226 / 6e-68 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 224 / 2e-67 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.002G061300 [exp] 198 / 6e-58 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.011G149300 [exp] 194 / 5e-56 AT1G33060 387 / 2e-125 NAC 014 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10035373 pacid=23170628 polypeptide=Lus10035373 locus=Lus10035373.g ID=Lus10035373.BGIv1.0 annot-version=v1.0 ATGGGAGGAGCTTCGTTGCCGCCAGGGTTCCGATTCCATCCCACGGACGAGGAACTGGTCGGATATTACCTGCACAGGAAAGTTCACGGTCTCGAAATCG AGCTCGAAGTCGTCCCTGTCGTAGACTTGTACAAATTTGATCCTTGGGAGCTGCCAGAGAAATCGTTCCTTCCGAGACGAGACATGGAATGGTTCTTCTT CTGTCCCAGGGACCGAAAGTACCCGAATGGGTCCAGAACGAACAGAGCAACGCGAGCTGGATACTGGAAAGCAACCGGTAAAGACAGGAAGATTGTTTGC AGATCTTCAGGAGGTATGACCGGATACCGAAAGACGCTAGTTTTCTACAGGGGAAGGGCTCCTCTAGGCGACCGGATGGATTGGGTCATGCACGAATATC GGCTCGAAGACGATCCCTACTCGTCAAACTCTCAGGGAGCCTACGCATTGTGCCGGATTGTGAAGAGGAACGAACAAGCTAACAAGACCGGTTCTAGGGA TGCCTCTCCTTCTTCTTCATCAATGATGACCGGAGATGCGACTGCAAGATCGAGAAGGGCTTCAAGAAAGAATGGGGAATTGGTTGCATCAACTTCAATC ATTTTCAGTGAAGGATTGAACCTTTCGGATAGCTTGCAGTCCACTCCAATGAGTTCTCCTCCTCGACAAGTAACGGGAGAGTCTGATCAGCTGGTTTCAG TGGATACCAGCGACCCATCTAACCCATGGCTTCTTTCACCTGATCTAATTCTCGACACGTCTAAGGAATATTCACGAGACCAAGGAAGCGGATTCTTCCC ACATTATGAAAGCACGACAACAACGATGATGCCGCCATGGCATCAACATGGCAATAATAACGAACCGTTCTCAACGAGCAGCACTTCGTATTCGAATCTC GTGATGGGAGATAATATTGAACATTCTTTAGATCATGATCACCTTAGTCACATTGGATCGTGGAATATGTCGCCGTACATGGACTTGTGGAGGAATGATG AGCAGCCTGATATGGCCTCATTCTATGATGATTATGATCACATGAACAACACCAATCTTTGA
AA sequence Show only first row Show all	>Lus10035373 pacid=23170628 polypeptide=Lus10035373 locus=Lus10035373.g ID=Lus10035373.BGIv1.0 annot-version=v1.0 MGGASLPPGFRFHPTDEELVGYYLHRKVHGLEIELEVVPVVDLYKFDPWELPEKSFLPRRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKIVC RSSGGMTGYRKTLVFYRGRAPLGDRMDWVMHEYRLEDDPYSSNSQGAYALCRIVKRNEQANKTGSRDASPSSSSMMTGDATARSRRASRKNGELVASTSI IFSEGLNLSDSLQSTPMSSPPRQVTGESDQLVSVDTSDPSNPWLLSPDLILDTSKEYSRDQGSGFFPHYESTTTTMMPPWHQHGNNNEPFSTSSTSYSNL VMGDNIEHSLDHDHLSHIGSWNMSPYMDLWRNDEQPDMASFYDDYDHMNNTNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10035373 [exp]	0	1
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	6.2	0.9326
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	9.5	0.9374
AT2G44260			Plant protein of unknown funct...		Lus10033542 [exp]	9.8	0.9044
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	10.1	0.9371
AT1G05060			unknown protein		Lus10035303 [exp]	12.2	0.9284
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	18.9	0.9112
AT4G16400			unknown protein		Lus10004418 [exp]	20.1	0.8784
					Lus10013034 [exp]	21.3	0.9261
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	21.4	0.9259
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	25.5	0.9267

Compare expression of checked genes

Lus10035373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.