Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32470 254 / 5e-88 Single hybrid motif superfamily protein (.1) AT2G35370 249 / 6e-86 GDCH glycine decarboxylase complex H (.1) AT2G35120 197 / 1e-65 Single hybrid motif superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030979 [exp] 331 / 2e-118 AT1G32470 254 / 4e-88 Single hybrid motif superfamily protein (.1) Lus10018319 [exp] 190 / 1e-62 AT2G35120 244 / 2e-84 Single hybrid motif superfamily protein (.1) Lus10017133 [exp] 122 / 3e-36 AT2G35120 162 / 1e-52 Single hybrid motif superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089300 [exp] 260 / 2e-90 AT1G32470 260 / 3e-90 Single hybrid motif superfamily protein (.1) Potri.001G144800 [exp] 260 / 2e-90 AT1G32470 255 / 3e-88 Single hybrid motif superfamily protein (.1) Potri.015G122500 [exp] 191 / 5e-63 AT2G35120 224 / 2e-76 Single hybrid motif superfamily protein (.1) Potri.012G123700 [exp] 190 / 1e-62 AT2G35120 217 / 2e-73 Single hybrid motif superfamily protein (.1) Potri.002G018100 [exp] 40 / 0.0002 AT1G75980 275 / 8e-95 Single hybrid motif superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF01597 [flax] [poplar] GCV_H Glycine cleavage H-protein
Representative CDS sequence Show only first row Show all	>Lus10035374 pacid=23170642 polypeptide=Lus10035374 locus=Lus10035374.g ID=Lus10035374.BGIv1.0 annot-version=v1.0 ATGGCGCTAAGAATATGGGCATCTTCAACTGCTAATGCTTTGGGACTCTCAGTTGCCTCCAAAGCTCCTGCTTTCTCTTCCCTCTCCAGATGCTTCTCCA CTGTAATGGATGGAGTTAAGTACGCAAAGTCACACGAGTGGGTGAAGCATGATGGTTCTGTGGCTCTTGTTGGCATCACCGATCACGCTCAGGATCATCT TGGGGAAGTGGTGTTCGTGGAGTTGCCGGAGAGTGGGAGCTCAGTGAGCCAAGGAGGAAGCTTTGCTAACATTGAGAGTGTTAAAGCTACCAGTGATGTC AACTCCCCAATTTCAGGGGACATTGTTGAAGTTAACACCAAGCTCACTGAAACCCCAGGACTGGTGAATTCAAGCCCATATGAAGATGGGTGGATGATAA AGGTGAAGCCAAGCAACCCAGCAGAGTTGGAGAGCTTGATGGGTCCAACCGAATACACCAAATTCTGTGATGAAGAAGATGCTGCTCATTGA
AA sequence Show only first row Show all	>Lus10035374 pacid=23170642 polypeptide=Lus10035374 locus=Lus10035374.g ID=Lus10035374.BGIv1.0 annot-version=v1.0 MALRIWASSTANALGLSVASKAPAFSSLSRCFSTVMDGVKYAKSHEWVKHDGSVALVGITDHAQDHLGEVVFVELPESGSSVSQGGSFANIESVKATSDV NSPISGDIVEVNTKLTETPGLVNSSPYEDGWMIKVKPSNPAELESLMGPTEYTKFCDEEDAAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	0	1
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	1.0	0.9927
AT2G26500			cytochrome b6f complex subunit...		Lus10011665 [exp]	2.0	0.9594
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	2.4	0.9540
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042759 [exp]	4.0	0.9364
AT4G24750			Rhodanese/Cell cycle control p...		Lus10043306 [exp]	4.5	0.9480
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	6.0	0.9538
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	7.7	0.9444
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	8.4	0.9428
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	11.2	0.9411
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029752 [exp]	11.5	0.9383

Compare expression of checked genes

Lus10035374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.