Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35470 77 / 3e-18 unknown protein AT1G07860 42 / 3e-05 unknown protein AT1G07870 42 / 7e-05 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030980 [exp] 236 / 6e-81 AT2G35470 81 / 7e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095500 [exp] 97 / 7e-26 AT2G35470 87 / 5e-22 unknown protein Potri.001G138300 [exp] 82 / 2e-20 AT2G35470 79 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035375 pacid=23170554 polypeptide=Lus10035375 locus=Lus10035375.g ID=Lus10035375.BGIv1.0 annot-version=v1.0 ATGCACAGGCAGTCGCTAGGCTCTCCAGTCTCCAAGCTCCATTTTCATGGCGGATCGCTTCCCAAACACGACCCCGCCATCCCTACTGACGATAACAGCT GCAAAGCCTCCTCCTCACTTTCTCCTTATGACGACCTCAAAACCGTCAAGCCTAGTTCTCGGCGATTCTCATCCTCGGCCTCGTCTTCATTGATGCCTCC GTCGCCGCATCCGGCGGCGAATACTCCAGAAAAGCTCATCCACCTGATTCCGATCGTCGTCCTCTTCTGCTTCCTCATCCTCTACCTCGTTTCTCACAAT CCTTCGCAGCCAAATTCAGGTGAGATGAATTCAATCGTCGACGAGCTCACGGCGCTCAAGGCCAAGGAGGCTCTGACGATTCGTAGCTTCAGGAACTTGC AGGAGACGGAAGAAGGCGGAAACAAGCACAAATCTCGCTCTCGTGCTGGCCACCGGAAATTCGCCGGTTTCTAA
AA sequence Show only first row Show all	>Lus10035375 pacid=23170554 polypeptide=Lus10035375 locus=Lus10035375.g ID=Lus10035375.BGIv1.0 annot-version=v1.0 MHRQSLGSPVSKLHFHGGSLPKHDPAIPTDDNSCKASSSLSPYDDLKTVKPSSRRFSSSASSSLMPPSPHPAANTPEKLIHLIPIVVLFCFLILYLVSHN PSQPNSGEMNSIVDELTALKAKEALTIRSFRNLQETEEGGNKHKSRSRAGHRKFAGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35470			unknown protein		Lus10035375 [exp]	0	1
					Lus10042510 [exp]	2.0	0.7941
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	5.5	0.7241
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	5.8	0.7759
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	8.5	0.7574
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10031017 [exp]	10.4	0.6783
					Lus10007785 [exp]	14.0	0.6843
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	14.6	0.7332
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10018900 [exp]	15.8	0.6088
AT5G58300			Leucine-rich repeat protein ki...		Lus10034446 [exp]	20.2	0.6816
AT5G11280			unknown protein		Lus10026797 [exp]	27.9	0.7190

Compare expression of checked genes

Lus10035375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.