Plant FIBer expression Database

Lus10035376 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19770 548 / 0 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
AT5G09320 484 / 6e-166 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030981
[exp]
802 / 0 AT3G19770 516 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G171500
[exp]
580 / 0 AT3G19770 536 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Potri.019G066200
[exp]
342 / 2e-114 AT3G19770 338 / 4e-112 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Potri.013G092250
[exp]
101 / 7e-25 AT3G19770 120 / 8e-32 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Potri.013G092100
[exp]
46 / 8e-06 AT3G19770 65 / 6e-13 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02204 VPS9 Vacuolar sorting protein 9 (VPS9) domain
Representative CDS sequence
>Lus10035376 pacid=23170607 polypeptide=Lus10035376 locus=Lus10035376.g ID=Lus10035376.BGIv1.0 annot-version=v1.0
ATGGAGAACTCCGATGTCTTCTTGGGGCTGCACGACTTCCTTGAACGGATGAGGCAGCCCTCTGCCGCTGATTTTGTTAAATCAATAAAAAGCTTCATTA
TTTCATTTTCAAACAATGCACCAGATCCTGAAAGGGATAGTAGTCTCGTACAAGAGTTCTTTAGCAAAATGGAGGCTGCTTTCCGAATTCATCCCCTTTG
GGCTGGCTGTTCGGACGAGGAGTTGGAGAGTGCTGGTGAAGGTCTCGAGAAGTATGTAATGACGAAGTTATTTACACGTGTGTTTGCTTCACTTCCAGAT
GATGTTAAAGCAGATGAACTACTTTTTGAGAAGATGTCTTTGATTCAACAGTTTGTTCGTCCAGAAAATTTGGATATCAAGCCACCATTCCAGAATGATA
CATCTTGGCTGCTTGCGCAGAAAGAGCTACAGAAGATCAATATGTACAAGGCACCAAGAGATAAGCTTGTTTGCATCCTCAATTGTTGCAAGGTCATAAA
CAATTTACTGGTTAATGCTTCTATTGCTTCAGATGAGAGTCCGCCTGGAGCTGATGAATTCCTTCCTGCGCTAATTTACGTCACCATAAGGGCAAATCCA
CCACAATTGCACTCAAACTTGTTGTATATACAGCGGTATAGGCGTCAATCCCGATTGGTTGGGGAAGCAGCCTATTTTTTCACAAACATGATGTCTGCAG
AGTCCTTTGTCTCAAACATTGACGCTAAGTCTATCTCAATGGAAGAAGCTGAATATGAAAAGAACATGGAATTAGCTCGAGCGCTGATCTCCAGCCCTTC
AAATGAGGATGGTAGAGATGGTGCAGTAGGTAATACGAGATCCCAAGCCCAAAGTTCGGAAAAGGACAGGGAGTCTTTAGTTCGTCCCTCAACTGCAGAA
GGTAGCTCTAGAGTTAAGGATTTGAAAGACGAGACATCAATGGCTAAGGTTCCTTCCCTATCGGATATCGAGAACAAAGGAGCTGCTTTGCTGTTGAAGG
AGGCAGACTCAAGTCAGGTGTTTCGAGAATACCCGTACTTATTTGCCAATGTTGGTGATCTAACAATCAATAACGTGGAAGAGTTACTAAACAGCTACAA
GGAGCTGGTATTCAAGTATGTTTGTGTTTGCAAAGGTTTGGGTGGTATTGGTCCATCTGCCCCGGTTCCCAATAATCAAGATCGAGATCTGGAGCAGAAG
AGTAGTGTAGAATCCAGAAAGAATGATGAAGAAACGGTAGTAGAGCAGAGTAATGAGGCGAGCATAGAGAATGTTGCAGCATCTAGAGATTCCAATGAAA
TAAGAGAATCGAAGGATCTCCATGAAGATAAGGACCACAATGAAGCAGAGGAACAAAAGGAAAGAGCGAGCGGCTCAGGAGTAGAAGTTTGA
AA sequence
>Lus10035376 pacid=23170607 polypeptide=Lus10035376 locus=Lus10035376.g ID=Lus10035376.BGIv1.0 annot-version=v1.0
MENSDVFLGLHDFLERMRQPSAADFVKSIKSFIISFSNNAPDPERDSSLVQEFFSKMEAAFRIHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASLPD
DVKADELLFEKMSLIQQFVRPENLDIKPPFQNDTSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLVNASIASDESPPGADEFLPALIYVTIRANP
PQLHSNLLYIQRYRRQSRLVGEAAYFFTNMMSAESFVSNIDAKSISMEEAEYEKNMELARALISSPSNEDGRDGAVGNTRSQAQSSEKDRESLVRPSTAE
GSSRVKDLKDETSMAKVPSLSDIENKGAALLLKEADSSQVFREYPYLFANVGDLTINNVEELLNSYKELVFKYVCVCKGLGGIGPSAPVPNNQDRDLEQK
SSVESRKNDEETVVEQSNEASIENVAASRDSNEIRESKDLHEDKDHNEAEEQKERASGSGVEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Lus10035376
[exp]
0 1
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10036878
[exp]
1.4 0.9293
AT4G02715 unknown protein Lus10006911
[exp]
5.3 0.9066
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Lus10018963
[exp]
7.5 0.9062
AT5G42920 AtTHO5 THO complex, subunit 5 (.1.2) Lus10006490
[exp]
7.9 0.9061
AT1G32340 NHL8 NDR1/HIN1-like 8 (.1) Lus10000908
[exp]
10.4 0.9046
AT5G54730 ATATG18F ARABIDOPSIS THALIANA HOMOLOG O... Lus10035835
[exp]
10.5 0.9135
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Lus10003567
[exp]
11.7 0.9128
AT3G20250 APUM5 pumilio 5 (.1) Lus10033353
[exp]
12.3 0.9166
AT5G62570 Calmodulin binding protein-lik... Lus10043463
[exp]
14.8 0.9061
AT5G28850 Calcium-binding EF-hand family... Lus10021174
[exp]
15.1 0.9083

Lus10035376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.