Plant FIBer expression Database

Lus10035377 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32260 214 / 3e-71 unknown protein
AT2G35480 174 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030982
[exp]
381 / 4e-137 AT1G32260 219 / 3e-73 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095600
[exp]
230 / 3e-77 AT1G32260 218 / 2e-72 unknown protein
Potri.001G138200
[exp]
226 / 5e-76 AT1G32260 216 / 9e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10035377 pacid=23170644 polypeptide=Lus10035377 locus=Lus10035377.g ID=Lus10035377.BGIv1.0 annot-version=v1.0
ATGGTGTTGTGGGAGATCACCCTAGCCACGGCTTATTTCTTGGGACTAAAACGGACTTACAGGCTAGCTCTCAAGATGCAACGCAAGGTCGTCAGCCCTA
AGCGCCCCGAGATCCGTGGCTTTCTGCAAAGACGAACACGTGCAATTTTTAGTGCAGCACTTTCAGTTCACCAGAACATTCAACAGCGAGACTTAGAAGT
TGGTCGAAACCTGGGTAACTGGATTCTGCGGTGGCTTGACAGAATGAAGCCTTCTGCTGGGATCCGCCCTCATGATCCCACCAGCACGTCAAGCATACAC
AGGATACAGCAGTCGAACAACCTAAAAAGCTCTGCGACCAATCAAGCATCTAAAAAAGGGGAATCCAACCGGCATCTGTTCTCTCCATACAGAGCTACAT
GGTCCAGGCCCTTCCCTACTATTACAATGATGATAAGGCCACCAAGACCTGCTGGGAATATGACACAGTACAGGCACTTGAATGGCTTAGGGCCTGAGAT
TTTTCAACGGAGTCCCACGATTGGAGCAAGTGGGTATGGGGGACTGCTTCGGAAGGATATAATACAATACCTTGGGAACTAA
AA sequence
>Lus10035377 pacid=23170644 polypeptide=Lus10035377 locus=Lus10035377.g ID=Lus10035377.BGIv1.0 annot-version=v1.0
MVLWEITLATAYFLGLKRTYRLALKMQRKVVSPKRPEIRGFLQRRTRAIFSAALSVHQNIQQRDLEVGRNLGNWILRWLDRMKPSAGIRPHDPTSTSSIH
RIQQSNNLKSSATNQASKKGESNRHLFSPYRATWSRPFPTITMMIRPPRPAGNMTQYRHLNGLGPEIFQRSPTIGASGYGGLLRKDIIQYLGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32260 unknown protein Lus10035377
[exp]
0 1
AT3G58140 phenylalanyl-tRNA synthetase c... Lus10028547
[exp]
9.7 0.6225
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Lus10043146
[exp]
12.4 0.6377
AT2G35130 Tetratricopeptide repeat (TPR)... Lus10018318
[exp]
22.8 0.6136
AT2G39630 Nucleotide-diphospho-sugar tra... Lus10023414
[exp]
30.7 0.5846
AT2G03210 ATFUT2, FUT2 fucosyltransferase 2 (.1) Lus10024079
[exp]
61.6 0.4631
AT1G79500 ATKDSA1, KDSA Aldolase-type TIM barrel famil... Lus10027741
[exp]
77.4 0.4723
AT4G30770 Putative membrane lipoprotein ... Lus10037695
[exp]
83.9 0.5043
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10020941
[exp]
97.9 0.4783
AT1G67785 unknown protein Lus10018082
[exp]
98.8 0.4984
AT5G24660 LSU2 response to low sulfur 2 (.1) Lus10015594
[exp]
136.8 0.4764

Lus10035377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.