Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035378 pacid=23170577 polypeptide=Lus10035378 locus=Lus10035378.g ID=Lus10035378.BGIv1.0 annot-version=v1.0 ATGCAGGTCAGCAATGTGCGACCTGCCCAACGGCATAATTGGTTCTTGGGGTTGCAGAGTTCTCTGCTCGGCTCCAGCAACATCTCGACCATGATCGGTT ACCCACTGTCTCCTAACTTCGTCCGCCGTCGCTCTCCAAAGCAAATCAACAGTCTGTCTAGTCGTCGGAAGAATCGAGAGTCTTCTGTACTGAGCCGAAG GAATTTCCGAATTTCAGACTTTGGTTCTGCCTCCGCGATCGCCATCTGTTTCCTGACAGCGCAGAAGGTGCGGAGGTTTCTAAGTCCAGGAAACGATCTG AAGATCGGTAAGATGCCGACATGTCCAAGTATTAGGAACAAGAACCTGCAAAAGGTGCGGAGCTCTGTGGAACAGGGCGAGGAAGTCAAGGATGGAGAGA AGGAGGAGCGGTGA
AA sequence Show only first row Show all	>Lus10035378 pacid=23170577 polypeptide=Lus10035378 locus=Lus10035378.g ID=Lus10035378.BGIv1.0 annot-version=v1.0 MQVSNVRPAQRHNWFLGLQSSLLGSSNISTMIGYPLSPNFVRRRSPKQINSLSSRRKNRESSVLSRRNFRISDFGSASAIAICFLTAQKVRRFLSPGNDL KIGKMPTCPSIRNKNLQKVRSSVEQGEEVKDGEKEER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035378 [exp]	0	1
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	10.1	0.7866
AT5G04910			unknown protein		Lus10008941 [exp]	10.3	0.7938
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	28.2	0.7865
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	28.8	0.7776
AT2G41760			unknown protein		Lus10007544 [exp]	30.7	0.7543
AT1G12400			Nucleotide excision repair, TF...		Lus10006998 [exp]	35.2	0.7845
AT2G04900			unknown protein		Lus10001166 [exp]	42.3	0.7676
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	42.4	0.7510
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	46.7	0.7516
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	50.7	0.7674

Compare expression of checked genes

Lus10035378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.