Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 63 / 2e-12 Protein of unknown function (DUF1262) (.1) AT1G61600 59 / 5e-11 Protein of unknown function (DUF1262) (.1) AT1G13500 55 / 2e-09 Protein of unknown function (DUF1262) (.1) AT1G13520 54 / 6e-09 Protein of unknown function (DUF1262) (.1) AT1G13540 50 / 5e-08 Protein of unknown function (DUF1262) (.1) AT1G13530 50 / 8e-08 Protein of unknown function (DUF1262) (.1) AT1G13490 50 / 1e-07 Protein of unknown function (DUF1262) (.1) AT1G13470 47 / 1e-06 Protein of unknown function (DUF1262) (.1) AT1G13510 45 / 6e-06 Protein of unknown function (DUF1262) (.1) AT1G13550 44 / 1e-05 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035372 [exp] 214 / 2e-72 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 180 / 8e-56 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 52 / 3e-08 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 47 / 8e-07 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 46 / 1e-06 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 43 / 3e-05 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106100 [exp] 90 / 5e-22 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 66 / 4e-13 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 64 / 2e-12 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 64 / 2e-12 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 59 / 4e-11 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 56 / 7e-10 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 56 / 7e-10 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035379 pacid=23170538 polypeptide=Lus10035379 locus=Lus10035379.g ID=Lus10035379.BGIv1.0 annot-version=v1.0 ATGTTCAACACTGCGTATGGTAATGATGATGATGATACTAGTACGGAGGTGGTGGGCGCGGTGGTGAGCTTCAGGGTGGCCGTGGGAAGGAGAGCTGATA TGGTGTTTGGGAGAGAGGCAGCTATGGTGAGGCATGGCGATGGTCATCATGGTGGGATGGTGTTGTTTAGGAGTAAGATGGATAAGAGGGTTGTGGTTGG GTTGAGTGTTGCAGTTGTGAAGAAGATTGAATGGGTGATGGAGGACGGAGGGTGGCTTGATGATGGTGGTGATCAAAGGGTGGTTAGAGTTGAGGAGGAA GTTGAGATTGGGAACAATGGTTGGAGGAGATTCTGTTGCTATGTACTGGTTGAGAGCTTTGTTTTCAGGAGGATGGATGGGACTGTGGTTTTCAAGTCTG ATTTCAGGCATACCAATAACATCAAATGGAGATGGGATTAA
AA sequence Show only first row Show all	>Lus10035379 pacid=23170538 polypeptide=Lus10035379 locus=Lus10035379.g ID=Lus10035379.BGIv1.0 annot-version=v1.0 MFNTAYGNDDDDTSTEVVGAVVSFRVAVGRRADMVFGREAAMVRHGDGHHGGMVLFRSKMDKRVVVGLSVAVVKKIEWVMEDGGWLDDGGDQRVVRVEEE VEIGNNGWRRFCCYVLVESFVFRRMDGTVVFKSDFRHTNNIKWRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	0	1
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	1.0	0.9458
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	2.8	0.9192
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	4.0	0.9118
AT3G61920			unknown protein		Lus10030204 [exp]	5.7	0.8740
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	6.3	0.9091
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	6.5	0.9010
AT5G18850			unknown protein		Lus10033997 [exp]	7.1	0.8850
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10016546 [exp]	7.3	0.8737
					Lus10025141 [exp]	7.9	0.9146
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	9.2	0.8926

Compare expression of checked genes

Lus10035379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.