Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06790 210 / 2e-69 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) AT5G59180 41 / 0.0002 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019886 [exp] 179 / 2e-58 AT1G06790 97 / 2e-26 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Lus10001559 [exp] 44 / 2e-05 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1) Lus10004986 [exp] 42 / 5e-05 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044500 [exp] 236 / 5e-80 AT1G06790 228 / 1e-76 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Potri.001G377200 [exp] 43 / 4e-05 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08292 [flax] [poplar] RNA_pol_Rbc25 RNA polymerase III subunit Rpc25 CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Lus10035380 pacid=23170478 polypeptide=Lus10035380 locus=Lus10035380.g ID=Lus10035380.BGIv1.0 annot-version=v1.0 ATGTTCTTTCTGAGTTTGGCAGAGCACAAACTGCGATTGCCTCCTCACCTTTTAGACCGTCCACTTCATGAAGCTATCAAGAAAGTGCTTGATGACGTCT TCTTAGACAAGGTTATATCAAACTTAGGACTCTGCGTCTCTATCTACGACATTAAAGATGTATCCGGTGGATTCATTCAAGCAGGGGAGGGTGCTTCCAC TTACACTGCATTGTTTAGGATGGTGGTTTTCCGTCCATATTCAGGAGAGGTTATCGTCGCCAAAATTAAGGAATCAGATGTAGATGGCCTTCATTTATCA ATCGGATTTTTTGATGATGTCTTTGTGCCGGCTCATCAACTTCCCCAACCATGCCATCACATTCCAGACCCAGACCGCAGGTACAAAGTGAGATGGATAT GGGAATACGATATCGAGGAGACAGGAAACCCTGAGCAGTACAACATTGACGGCTATGATGAGGTTAAATTCCAGGTTCTAAGTGTGAGTTTCCCAACACT TCCAATTGAGCCGCAAGAGAAGCCTTTTTCCCCGATGGTAGTTACTGGATCCATGTCTGACTCTGGTTTGGGGCCAGTTTCATGGTGGTAA
AA sequence Show only first row Show all	>Lus10035380 pacid=23170478 polypeptide=Lus10035380 locus=Lus10035380.g ID=Lus10035380.BGIv1.0 annot-version=v1.0 MFFLSLAEHKLRLPPHLLDRPLHEAIKKVLDDVFLDKVISNLGLCVSIYDIKDVSGGFIQAGEGASTYTALFRMVVFRPYSGEVIVAKIKESDVDGLHLS IGFFDDVFVPAHQLPQPCHHIPDPDRRYKVRWIWEYDIEETGNPEQYNIDGYDEVKFQVLSVSFPTLPIEPQEKPFSPMVVTGSMSDSGLGPVSWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06790			RNA polymerase Rpb7 N-terminal...		Lus10035380 [exp]	0	1
AT1G09280			unknown protein		Lus10008045 [exp]	3.3	0.8072
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10015357 [exp]	18.7	0.7580
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10009552 [exp]	28.2	0.7385
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	34.7	0.7457
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	35.2	0.7453
AT4G32910			unknown protein		Lus10011625 [exp]	49.5	0.7363
AT3G59650			mitochondrial ribosomal protei...		Lus10010559 [exp]	65.4	0.7384
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	73.1	0.7231
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	89.6	0.7033
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	130.6	0.7058

Compare expression of checked genes

Lus10035380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.