Plant FIBer expression Database

Lus10035381 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74340 119 / 6e-37 DPMS2, DPMS dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030984
[exp]
140 / 1e-45 AT1G74340 120 / 2e-37 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G138100
[exp]
120 / 1e-37 AT1G74340 124 / 3e-39 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
Potri.003G095701
[exp]
39 / 1e-05 AT1G74340 37 / 6e-05 dolichol phosphate mannose synthase 2, dolichol phosphate-mannose biosynthesis regulatory protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07297 DPM2 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
Representative CDS sequence
>Lus10035381 pacid=23170661 polypeptide=Lus10035381 locus=Lus10035381.g ID=Lus10035381.BGIv1.0 annot-version=v1.0
ATGGAATTAGCAGACAGAGCAGTTGGATTACTCTTGTCAATAGTCAGCTTATCGATCTTCACATATTATACCTTCTGGGTTATTATCCTGCCGTTTGTAG
ACCATGATCACTTCATTCACCAATATTTCCTGCCACTGGAGTATGCCATATTCATACCCGTATTTGCTGGTGTCGCCCTTGTTTGCTTATTGTCTCTGTT
TGTTGGGTCTGTCATGCTCAAGTCCAAGAAGAAGAAGGCCTGA
AA sequence
>Lus10035381 pacid=23170661 polypeptide=Lus10035381 locus=Lus10035381.g ID=Lus10035381.BGIv1.0 annot-version=v1.0
MELADRAVGLLLSIVSLSIFTYYTFWVIILPFVDHDHFIHQYFLPLEYAIFIPVFAGVALVCLLSLFVGSVMLKSKKKKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74340 DPMS2, DPMS dolichol phosphate mannose syn... Lus10035381
[exp]
0 1
AT4G11410 NAD(P)-binding Rossmann-fold s... Lus10032281
[exp]
9.5 0.6557
AT1G05430 unknown protein Lus10006108
[exp]
17.6 0.6493
AT1G77580 Plant protein of unknown funct... Lus10018164
[exp]
29.1 0.6062
AT4G09550 ATGIP1 ARABIDOPSIS ATGCP3 INTERACTING... Lus10018288
[exp]
30.6 0.5816
AT2G44525 Protein of unknown function (D... Lus10007558
[exp]
35.7 0.5569
AT1G11000 ATMLO4, MLO4 MILDEW RESISTANCE LOCUS O 4, S... Lus10012698
[exp]
36.3 0.5753
AT2G21250 NAD(P)-linked oxidoreductase s... Lus10018058
[exp]
44.6 0.5855
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Lus10042909
[exp]
58.4 0.4952
AT4G12490 Bifunctional inhibitor/lipid-t... Lus10024619
[exp]
66.2 0.5211
AT2G13690 PRLI-interacting factor, putat... Lus10033484
[exp]
85.5 0.5057

Lus10035381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.