Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15880 50 / 2e-06 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 44 / 0.0002 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030985 [exp] 340 / 7e-117 ND / Lus10018809 [exp] 112 / 2e-29 ND / Lus10009741 [exp] 109 / 3e-27 ND / Lus10012401 [exp] 96 / 2e-23 ND / Lus10000886 [exp] 94 / 6e-22 ND / Lus10010773 [exp] 89 / 8e-21 ND / Lus10007672 [exp] 82 / 4e-18 ND / Lus10023136 [exp] 79 / 2e-16 ND / Lus10002224 [exp] 67 / 1e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221500 [exp] 43 / 0.0003 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035382 pacid=23170496 polypeptide=Lus10035382 locus=Lus10035382.g ID=Lus10035382.BGIv1.0 annot-version=v1.0 ATGACAAAGAAGAAGAAGGTAACTGTAGTACTTAAGAAGTGTAAGGCAATGAAGACAACGACAAGAAAGCCACCTGCACAACGACCACATGAAGTTATGG AAGCTGGTGAGGTTACAGAGATCGTCAACATGGAAGCTGGTGAGGTTACAGAGACCGTCAACATGAAAGCTGGCGAGATCTTCAACATGGAAGCTGGTGA GGTTACAGAGACCGTCAACATGAAAGCTGGCGAGATCGTCAACATGGAAGCTGGTTCAGAACAAAACGTTGGTGTTGATGATGATATCATCAACGTTGAT AATGATATCATCGACTTGAGCACGACAACAAACAATTATAAGAGCACAACTATGAATCGTGCAAGTTTGCGGCGCTTAGGAGGTGTGATACGGAAGGAAT TTTATTTGTCGAAACCCTTCAAGCTTGCTCTGACTGATGATGAGCAGAAGCTCGTCAAGTATGTCCTCTCCAACCCAGAAGATAGAGATGCTCTTGAAAT CTGCCACTTTCCCGAAATGAAGATTCGGCGATTCGAGCTACATTCATTGACACCTCATAAGCAGTTGTGTAGTACCATTATCGATGCTTTTGCGCATCTG CTGAACAGAGAGGATATAAAGAAGAATGGCAAGGTTACTAAGTTTTGCTTCGAAACAAACCGTGCGGTCGAAAATGGCGTAGAAGGAGAAGAAGTTGACA AGTCGGACGACAATCAAATGAGGAAACTTTGCGCCAACTTCGACAAACTGGTTCATCTGGACTACTTACAAGGGGTGTCATGGGAAGATTGTGAATATGT ATTTTTCCCAGTCCATGGCGGTGAGAGTTTCGCACATTACTGGGCGTTTGCAATCGACTTGAAGAGGGAGGAGCTTCTGTGCCTCAACAGCATGAAGTGT GAGGAAAGATTCAACAAGGAGCTCTGCTACCACGACTTTGGGAATCAATTAATGTCATATGCGAGGAGCTTCATCCAAGCTCACACCGGCAAGGACATAT CGAAATTTGAGTGGGTTGTCGTCCCAGATGCACCAGAACAACATGATTTGCAGAGTTGTGGCGTGTTCGTCATCAACTTCATGCAACACTTCGATGGCGG CAGCTTCACGTCTGAGCAGCAACAATGGGGGGAGAGTAAAGTCATCGACGAGCACCGAGTTAGAATGATCTACCGCCTCGTGACTTCGCCGGACAACACT CTGCTTCCGAAGATTGTTGAGGCAGCTGAGGCCTGGTCTCAAACTGTGGGAAGCCCGGGAAAGGCTAAACGAAGCACTAGGAAGAACTAA
AA sequence Show only first row Show all	>Lus10035382 pacid=23170496 polypeptide=Lus10035382 locus=Lus10035382.g ID=Lus10035382.BGIv1.0 annot-version=v1.0 MTKKKKVTVVLKKCKAMKTTTRKPPAQRPHEVMEAGEVTEIVNMEAGEVTETVNMKAGEIFNMEAGEVTETVNMKAGEIVNMEAGSEQNVGVDDDIINVD NDIIDLSTTTNNYKSTTMNRASLRRLGGVIRKEFYLSKPFKLALTDDEQKLVKYVLSNPEDRDALEICHFPEMKIRRFELHSLTPHKQLCSTIIDAFAHL LNREDIKKNGKVTKFCFETNRAVENGVEGEEVDKSDDNQMRKLCANFDKLVHLDYLQGVSWEDCEYVFFPVHGGESFAHYWAFAIDLKREELLCLNSMKC EERFNKELCYHDFGNQLMSYARSFIQAHTGKDISKFEWVVVPDAPEQHDLQSCGVFVINFMQHFDGGSFTSEQQQWGESKVIDEHRVRMIYRLVTSPDNT LLPKIVEAAEAWSQTVGSPGKAKRSTRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	0	1
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	3.0	0.9615
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	4.7	0.9563
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	6.0	0.9554
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	6.3	0.9433
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	6.9	0.9441
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	7.3	0.9416
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	10.2	0.9408
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	10.6	0.9386
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	10.8	0.9332
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023905 [exp]	12.0	0.8923

Compare expression of checked genes

Lus10035382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.