Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03000 119 / 5e-35 EF hand calcium-binding protein family (.1) AT1G32250 111 / 7e-32 Calcium-binding EF-hand family protein (.1) AT1G18530 81 / 1e-19 EF hand calcium-binding protein family (.1) AT3G25600 79 / 3e-19 Calcium-binding EF-hand family protein (.1) AT4G14640 69 / 2e-15 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G22930 68 / 7e-15 CML11 calmodulin-like 11 (.1) AT5G37780 65 / 5e-14 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 65 / 5e-14 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41110 64 / 1e-13 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 64 / 1e-13 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030986 [exp] 176 / 4e-57 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10004610 [exp] 118 / 2e-34 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1) Lus10019055 [exp] 99 / 9e-27 AT1G32250 93 / 9e-25 Calcium-binding EF-hand family protein (.1) Lus10017900 [exp] 89 / 9e-23 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10004539 [exp] 85 / 4e-22 AT3G03000 164 / 2e-53 EF hand calcium-binding protein family (.1) Lus10039391 [exp] 67 / 2e-14 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10027243 [exp] 66 / 7e-14 AT1G18530 208 / 5e-70 EF hand calcium-binding protein family (.1) Lus10027283 [exp] 64 / 1e-13 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 64 / 1e-13 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138000 [exp] 132 / 5e-40 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.003G095700 [exp] 130 / 3e-39 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.010G132800 [exp] 82 / 3e-20 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.015G052600 [exp] 81 / 1e-19 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.010G080900 [exp] 70 / 1e-15 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.015G032600 [exp] 67 / 2e-14 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 66 / 2e-14 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 66 / 5e-14 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.016G024700 [exp] 64 / 1e-13 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 64 / 1e-13 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10035383 pacid=23170591 polypeptide=Lus10035383 locus=Lus10035383.g ID=Lus10035383.BGIv1.0 annot-version=v1.0 ATGAAAGGAAGTCAGATCGCCGACCTCCGCGAAATCTTCCGCTCCTTCGACCGAGACAGCGACGGGAGTTTGACTCAGCTAGAATTAGGCTCCTTGCTCC GATCCCTGGGCCTCAGCCCCAGCCCGGACCAGCTCGACGCCCTGATCAAGACCGCCGACACAAACAGCAACGGCACGGTCGAGTTCTCTGAGTTTCTGGC GCTTGTAGCGCCCGATCTTGTCCGGCAACATCCAGCGGAGGAGGACGAGGAGGAGAAGTCTCCGTACAGCGACGAGCAGCTGAAGCAGCTGTTCGGGATG TTTGACCGCGACGGAAACGGGTACATAACTGCGGCTGAGCTGGCCCACTCGATGGCAAGCCACTGTCTCCCGCTGGGTTACCATGATGTCCAGTTCCCTA ACCAGGAGCTTAGCAGATGGCTCTTGCTCGACAGTGTTGGCGGCTCCGAAGCTCGGTCATAA
AA sequence Show only first row Show all	>Lus10035383 pacid=23170591 polypeptide=Lus10035383 locus=Lus10035383.g ID=Lus10035383.BGIv1.0 annot-version=v1.0 MKGSQIADLREIFRSFDRDSDGSLTQLELGSLLRSLGLSPSPDQLDALIKTADTNSNGTVEFSEFLALVAPDLVRQHPAEEDEEEKSPYSDEQLKQLFGM FDRDGNGYITAAELAHSMASHCLPLGYHDVQFPNQELSRWLLLDSVGGSEARS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32250			Calcium-binding EF-hand family...		Lus10035383 [exp]	0	1
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	7.4	0.7762
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	11.8	0.7644
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	12.1	0.7708
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	13.5	0.7681
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	17.6	0.7482
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	21.9	0.7594
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	21.9	0.7506
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	24.4	0.7506
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	28.7	0.7505
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	32.0	0.7029

Compare expression of checked genes

Lus10035383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.