Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35490 337 / 3e-114 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 231 / 5e-74 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 231 / 1e-73 FIB fibrillin (.1) AT5G09820 52 / 2e-07 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT2G46910 48 / 5e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 45 / 2e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT2G42130 44 / 7e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030987 [exp] 587 / 0 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 219 / 7e-69 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 218 / 2e-68 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020982 [exp] 57 / 6e-09 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10033514 [exp] 56 / 6e-09 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 56 / 6e-09 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10036340 [exp] 53 / 1e-07 AT2G46910 325 / 6e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10004171 [exp] 49 / 1e-06 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10012003 [exp] 49 / 2e-06 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137900 [exp] 360 / 3e-123 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G095900 [exp] 352 / 2e-120 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 228 / 2e-72 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 60 / 3e-10 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 56 / 1e-08 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 52 / 2e-07 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10035384 pacid=23170539 polypeptide=Lus10035384 locus=Lus10035384.g ID=Lus10035384.BGIv1.0 annot-version=v1.0 ATGGCCCTTCTCTCCACAGCTCACACTTCCCCCTTCTTCACCAAAACCCCCAATTCCATATCTCCAGTTTCCACTCACAAACCCCCACCTTCCACCCTCT TCTTCCCCAGAAACCCTAACCAGTCTTCCCGATTCACATCCCTTCTTCCCCGCTCCTCACCTTCCGATTCCAATCCGAAACCCGACAAGAAGCCTACCCC GGTCACCGATGAGTGGGGCGAGAAGTCAGAAACCGAGCCCGAAAGGCTCAAGGGCGCCGCGTCGGATCCTCCGCTGAACGAGGATGAGTGGGAGGTGAAG GACGAGGAGGCTTACCCCGCCGGAGCAGGAAATGGAACTCCTTCTCCGGCCGCTGCAGCCGCAACTGAAGAAGAGAAGAAAAACAAGGACGAAGCTATCG AGGAGCTGAAGAGGAGTTTGGCGGACACTGTTTACGGCACGGATTTTGGGTTCCGGGCCGGCTCCGAGGTCCGAGCTGAAGTATCCGAGTTGGTCAACCA GTTGGAGGCTGCGAATCCTACTCCTGCTCCTGTTGACGCCACCCTGTTGCTCGATGGGAACTGGATTTTGCTGTACACCGCATCTTCGGAGCTTCTGCCG CTTCTAGCAGTTGGAGGAACATCGCCTTTGTTGAAGGTGAAAAAGATAACTCAATCAATCAACACCAGCAGTGCCACCATTGTGAACTCGACCACATTGT CGAGTCCGTTTGCTGATTTCTCATTCAGCGCAACTGCTAATTTTGAAGTCAGAAGTCCTTCTAGAATACAGGTTGAATTCAAAGAGGGAACTCTGCAGCC TCCAGATGTGAAATCCAGCATCGATCTTCCGGACGAAGTAACTTTATTTGGCCAGAAGATCAGCCTGTCGCCTGTTCGTCAATCCCTCAGTCCTCTGCAA CAGCCGGTGGAGGCTATCTCGAGAGCCATTTCAGGGCAGTCGCCCCTTACAGTTCCGATTCCGGGTGGTCGATCAAGCTCATGGCTTATAACTACCTACC TCGATGAGGATCTTCGGATTTCGAGAGGTGATGGCGGTCTCTTCATACTTGCCAAGGAAGGCAGCCCTCTTTTGTTTCAGTAA
AA sequence Show only first row Show all	>Lus10035384 pacid=23170539 polypeptide=Lus10035384 locus=Lus10035384.g ID=Lus10035384.BGIv1.0 annot-version=v1.0 MALLSTAHTSPFFTKTPNSISPVSTHKPPPSTLFFPRNPNQSSRFTSLLPRSSPSDSNPKPDKKPTPVTDEWGEKSETEPERLKGAASDPPLNEDEWEVK DEEAYPAGAGNGTPSPAAAAATEEEKKNKDEAIEELKRSLADTVYGTDFGFRAGSEVRAEVSELVNQLEAANPTPAPVDATLLLDGNWILLYTASSELLP LLAVGGTSPLLKVKKITQSINTSSATIVNSTTLSSPFADFSFSATANFEVRSPSRIQVEFKEGTLQPPDVKSSIDLPDEVTLFGQKISLSPVRQSLSPLQ QPVEAISRAISGQSPLTVPIPGGRSSSWLITTYLDEDLRISRGDGGLFILAKEGSPLLFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35490			Plastid-lipid associated prote...		Lus10035384 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	1.0	0.9428
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	3.5	0.9293
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	4.0	0.9259
AT2G46735			unknown protein		Lus10002690 [exp]	4.2	0.9268
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	5.3	0.9046
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	8.7	0.9167
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	10.4	0.9017
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	13.6	0.9155
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	16.1	0.9001
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	17.3	0.8901

Compare expression of checked genes

Lus10035384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.