Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46910 841 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 244 / 2e-67 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT2G34880 232 / 1e-64 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 229 / 6e-63 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 221 / 5e-61 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G08620 217 / 1e-58 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT5G04240 209 / 7e-56 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G63490 197 / 4e-52 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G38950 155 / 5e-39 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030988 [exp] 1518 / 0 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10019482 [exp] 257 / 1e-71 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 227 / 1e-61 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 223 / 4e-60 AT3G04490 1370 / 0.0 unknown protein Lus10008063 [exp] 213 / 2e-57 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10043332 [exp] 213 / 7e-57 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10008495 [exp] 210 / 6e-56 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10009218 [exp] 206 / 8e-55 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037989 [exp] 206 / 1e-54 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096100 [exp] 1035 / 0 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 1031 / 0 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 272 / 1e-76 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.015G089000 [exp] 271 / 2e-76 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.019G018700 [exp] 236 / 1e-64 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 230 / 8e-63 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 216 / 8e-58 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 212 / 5e-57 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.011G155100 [exp] 211 / 8e-57 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.010G224700 [exp] 209 / 7e-56 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10035385 pacid=23170599 polypeptide=Lus10035385 locus=Lus10035385.g ID=Lus10035385.BGIv1.0 annot-version=v1.0 ATGATGAGTAGAAGTGGAGGAGATGCTTTGAGGACTTCAGCATCATGCGGTGTTAGATTGCCTCGTAATGCAGGTTCAACTGTTCATCCAAGCAGTAGTA CGAGTGGAAATGATGCATGCTTGAAGCGGAAAGTGGACAAGTTTGATACTAGTGACTTGGAATGGATGGAGAAAATTCCTGAATGCCCTGTGTATTACCC AACGAGGGAGGAGTTTGAGGATCCCTTAGTGTACTTGCAGAAAATTGCAGTTGAAGCTTCAAAATATGGTATTTGCAAGATCGTTTCTCCCTTGAGTGCT TCTGTTCCTGCCGGGGTTGTATTAATGAGGGAAAAAGCAGGATTTAAGTTCACGACCAGAGTACAGCCTCTGCGTCTTGCAGAGTGGGATAATGATGACC GAGTCACATTTTTTATGAGTGGAAGGAACTACACATTTCGTGATTTTGAGAAAATGGCGAACAAGGTTTTTTCACGTAGGTACTGTAGTTCTGGTTGCCT CCCTGCAACCTACATGGAAAAAGAATTTTGGCAGGAAATTGCATGTGGAAAGACTGAAACAGTTGAATATGCTTGTGATGTTGATGGCACCGCCTTTTCG TCATCTCCCACTGATCCACTTGGAAGTAGCAAATGGAATTTGAAGAATCTATCACGGCTGCCGAAGTCTGTTTTGCGCCTTCTGGAGACTGCCATTCCAG GAGTAACCGATCCAATGCTATATATTGGGATGTTATTTAGCGTGTTTGCTTGGCACGTGGAAGATCATTATTTGTACAGTATCAACTACCATCACTGTGG GGCAGCCAAAACTTGGTATGGGATTCCTGGCCATGCAGCACTTGGATTTGAAAAGGTGGTCAGGGATCATGTATACACACGTGATATTATGTCCGCTGAC GATGAGGATGGAGCTTTTGATGTACTTTTGGGGAAAACAACTCTTTTCCCACCAAATATACTGATGGAACATGACGTCCCCGTCTACAAAGCTGTCCAGA AGCCCGGCGAGTATGTGATAACATTCCCAAGAGCATATCATGCAGGTTTTAGCCATGGTTTTAACTGCGGCGAGGCTGTGAACTTTGCCATTGGTGATTG GTTCCCTTTGGGGTCTGTGGCGAGCCGGCGTTATGCCCTCCTTAACAGGATGCCTTTGCTGCCTCATGAAGAGCTTCTCTGTAAAGAAGCAATGCTTCTC TACCCCTGTTTGCATCTCGAAGACTCAGATTGTTCCTTGGGGGACTTGGTCTCTCAACATAGTGTTAAAGTCTCGTTTGTGAAGCTGATGCGTTTCCAGC ATCGTGCTCGCTGGTTTTTCGCGAGATCAGGTGCATGCACTGGAGTTCAGACAAACACGTTTGGTACCATCCTCTGCAGCCTATGCAAAAGGGACTGTTA TCTAGCTTTCATCAATTGCAGCTGTGATTTGCATCCTGTGTGCCTTCGTCATGATGCTGCATCACTTGATTTCTCTTGTGGGAGAAAATTTACTTTGTTC TTGAGAGAGGATGTTGCAGATATGGAAGTTGCAGCTAAGAAATTTGAGGACGAAGACAGTGTTAGGCAGGAGATACAAGCTCTGTCTCGTTCTAGCGATG ATTGGTGCTCTTACACTTCACCTTACACGTGCCAGAATGTGACAAAGACCGAATACTCTCCTTACTGTCAAATAAAATTTGAGTTTTGTGCTCATTCTGC ATTACTAAATCCTCGTCAGGGTGCCATTGACAGCCGTGGAAATATAGACATCAAATCTTCTGCTCATTCCCAAGGGCCGACAGTTAACCACTCTTCTGTA GCATTTGATGCAAAGGAGCTAGTTCACCTGGGCACCAGTGGGAGTATTCATTCTAAAGACCTGATGCGAGAAGTATCAGATACGAGTGCTGGACATTCAG GATCCTCTGAGTTAACTGATGCTCATTCAAAGACTGAGCCGGGCAATCATGTTACAGAGATTAGGCCTTATGCGTATCATTATTGTGATGATTCAGATTC CGAAATATTTAGAGTTAAGCGTCGGTCTTCTCTGAAGGTCCAAAAACGAGCTGTCAGTGATTCCTCTTCCCCGAGGAATCCTGAGTATCAGGGGCTTAAA CGATTGAGGAAGCACCAAGGAGATGGAGGAAGAAGCGGACAATCAATGTCATCATCATCATCAGAGAACCGTAGAGTTGGCGGATCGATTCGGAATTTGA CATCCATATCCAGCAGAGTTTACAGAGAATCTCCAGTTAGTAGTAGTAGTAGTATGTTGAAGGACAGAGACAGATGGTCGAGGGGAAATGCGACTCCCAT CTCAATCAAGATTAAGAAACCGAGCAATGAGGACGCATGTAGTAAGCAAAGAGAGTATCGAAGCGTAAATAGATTCCAACATGATGAATTAGGGAGAAGG GAGGCACCCTCAATAGAGATGACAGGGGCTAAGCGTCTAAAGGTCAGAGGCCCCTCACATTCATATATAGGGTCAGAGAGAGCAGATTAG
AA sequence Show only first row Show all	>Lus10035385 pacid=23170599 polypeptide=Lus10035385 locus=Lus10035385.g ID=Lus10035385.BGIv1.0 annot-version=v1.0 MMSRSGGDALRTSASCGVRLPRNAGSTVHPSSSTSGNDACLKRKVDKFDTSDLEWMEKIPECPVYYPTREEFEDPLVYLQKIAVEASKYGICKIVSPLSA SVPAGVVLMREKAGFKFTTRVQPLRLAEWDNDDRVTFFMSGRNYTFRDFEKMANKVFSRRYCSSGCLPATYMEKEFWQEIACGKTETVEYACDVDGTAFS SSPTDPLGSSKWNLKNLSRLPKSVLRLLETAIPGVTDPMLYIGMLFSVFAWHVEDHYLYSINYHHCGAAKTWYGIPGHAALGFEKVVRDHVYTRDIMSAD DEDGAFDVLLGKTTLFPPNILMEHDVPVYKAVQKPGEYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGSVASRRYALLNRMPLLPHEELLCKEAMLL YPCLHLEDSDCSLGDLVSQHSVKVSFVKLMRFQHRARWFFARSGACTGVQTNTFGTILCSLCKRDCYLAFINCSCDLHPVCLRHDAASLDFSCGRKFTLF LREDVADMEVAAKKFEDEDSVRQEIQALSRSSDDWCSYTSPYTCQNVTKTEYSPYCQIKFEFCAHSALLNPRQGAIDSRGNIDIKSSAHSQGPTVNHSSV AFDAKELVHLGTSGSIHSKDLMREVSDTSAGHSGSSELTDAHSKTEPGNHVTEIRPYAYHYCDDSDSEIFRVKRRSSLKVQKRAVSDSSSPRNPEYQGLK RLRKHQGDGGRSGQSMSSSSSENRRVGGSIRNLTSISSRVYRESPVSSSSSMLKDRDRWSRGNATPISIKIKKPSNEDACSKQREYRSVNRFQHDELGRR EAPSIEMTGAKRLKVRGPSHSYIGSERAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	0	1
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	1.0	0.8716
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	2.0	0.8064
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	3.9	0.8004
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	14.1	0.7507
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	16.4	0.7428
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	17.3	0.7081
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	18.8	0.7124
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	19.4	0.7067
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	29.0	0.7678
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	29.1	0.6830

Compare expression of checked genes

Lus10035385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.