Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32240 63 / 1e-11 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030989 [exp] 144 / 8e-41 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137600 [exp] 63 / 2e-11 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.003G096300 [exp] 61 / 7e-11 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035386 pacid=23170536 polypeptide=Lus10035386 locus=Lus10035386.g ID=Lus10035386.BGIv1.0 annot-version=v1.0 ATGGAGTTGTTCCCAGCTCAGCCGGATTTGTCTCTTCAAATCAGCCTCCCCAACACCAAACCCGCCTCCTCCACGTGGCGGCGGACCCCCGCAGAAAACG CCGATGATAGTCCTTTGACCACCGATGAAGACGCCGATGATAGTCCTTTGGGTGGTTTCTGGAAAAGAGCCCTCGACTCCCGCAGCAGCAACACCGCCAT ACCCACAACCACCACCACCAACACCGCCGGAAGCTCCTCTTTTGACCTGTCCTTGTCAAATCCTTCCTCCTCCTCCGCCGTTAACAACCCACACTACTAT CCTCCCAACCGCCACCACTTCAACAATGGAAGTACTAGTACTAGTAGTAGTAATGCCAGCACTAATTTCTTCCGATCTGGCGGCCCTAATTTCCAACAGC ATCTTCATCCTCACCACCAGCAGTACCAGAATCTCAACCACCACCATCATCATCATCAGTACCCAGCAACGGCGGTGGAGGAGATAGGATACTTGAGACC CATCAAAGGGATCCCACTTTACCAAAACCCTCCTTCTCCTTCTAATTCCTTCTCTCCAATAAACATCCACCACCACCACCAGCTTCATCCCACCACCCGC TCCCGAAATGCGAACCAATAA
AA sequence Show only first row Show all	>Lus10035386 pacid=23170536 polypeptide=Lus10035386 locus=Lus10035386.g ID=Lus10035386.BGIv1.0 annot-version=v1.0 MELFPAQPDLSLQISLPNTKPASSTWRRTPAENADDSPLTTDEDADDSPLGGFWKRALDSRSSNTAIPTTTTTNTAGSSSFDLSLSNPSSSSAVNNPHYY PPNRHHFNNGSTSTSSSNASTNFFRSGGPNFQQHLHPHHQQYQNLNHHHHHHQYPATAVEEIGYLRPIKGIPLYQNPPSPSNSFSPINIHHHHQLHPTTR SRNANQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	1.0	0.9464
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	2.0	0.9337
AT5G48500			unknown protein		Lus10009584 [exp]	4.6	0.8472
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	5.9	0.8402
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	7.3	0.8185
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	8.9	0.8193
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	8.9	0.8412
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	10.6	0.7974
AT5G49100			unknown protein		Lus10006504 [exp]	12.2	0.7812
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	13.0	0.8387

Compare expression of checked genes

Lus10035386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.