Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35500 240 / 3e-76 SKL2 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030990 [exp] 365 / 3e-123 AT2G35500 445 / 6e-154 shikimate kinase-like 2, shikimate kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096600 [exp] 275 / 7e-90 AT2G35500 447 / 5e-157 shikimate kinase-like 2, shikimate kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10035389 pacid=23170573 polypeptide=Lus10035389 locus=Lus10035389.g ID=Lus10035389.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTACCACCGCCGGAGCCAAACTCCGTTCCATTCATCAAAATTCAATAACCAATCCAGCTTCCGACGACGACAACCTACCACCTCCTTTCT CTCTTTCGCGCCCATTTCCACTTTCACTTCTATCCATTACTCCTTCTCTCCCTCCCGCCGTTCCTCCAAGCCCGACTCTCCCTTTTTCTGCAAATTTCAC CGACGGTTCTTCGGAGATCGAATTGAGACTGTCACTCACTGGACAAACACTTACTGGACAAGAAATTCCAGACCCGAAGAACGTGTTTGTGGACGCAGAT GGGACGTCGTTGAGAGTCTCCGTTCTACGCGATGGTTCCATCGTCACGCTGATGGAGACCAATCAGCTGTTTGATAGGGTTAAGCCTTCTGAAACTATTT GGTATATAGATGATGATGAGATTTTGATCAACTTGAAGAAGCAAGACCCGGCTACTGAAAGGAACTTCGGTGTTATCGTTGGCAATTCCACCGAAGTGAA CCAGAGGGTGGTTCGAGAACTTGCAGTTGGTCTCGGGTATGCGCCTCTGGATACAGAGGAGTTGCTGGAAACTCTCGCAAAGCAAACAATCGATTCGTGG ATCCTTGCTGAAGGCTTTGACTCCGTAGCTGAAGCTGAAGGTTTGGTGCTGGAAAGCCTGAGCAGCAATGCTCGTGCTGTTGTATCGACATTAGGAGGGA AGTGCGGAGCAGCAAGTGGCAGCATCTTCATGCAGGGTTTAGTGTCTGGATTTCGCAGACAGAAGCTATGGATGAAGATACAGCTCAGGAGGAAGCCAGG AGGAACATGCAAGACAGCAATAGTGGCTACTAGAAAGCCTGACGTGGTAGTCAAGCTCCAAGGATGGGACCCTGATCATGCCAAAAGTGTAGCACAAGCA TCGTTGAGTGCCCTCAAACGTCTAATTTTGTCAGACAAGGAACTCCAAGGATGGGTTGTAGAGGCGATTGGCAAGACATCAAGCCACCAGGCTGGAATCC AGCTACCGATGGTGGATCCGCTTTCTAAGCAATTGCTGTTGAAACTTCATCTGGATATCTAA
AA sequence Show only first row Show all	>Lus10035389 pacid=23170573 polypeptide=Lus10035389 locus=Lus10035389.g ID=Lus10035389.BGIv1.0 annot-version=v1.0 MAAATTAGAKLRSIHQNSITNPASDDDNLPPPFSLSRPFPLSLLSITPSLPPAVPPSPTLPFSANFTDGSSEIELRLSLTGQTLTGQEIPDPKNVFVDAD GTSLRVSVLRDGSIVTLMETNQLFDRVKPSETIWYIDDDEILINLKKQDPATERNFGVIVGNSTEVNQRVVRELAVGLGYAPLDTEELLETLAKQTIDSW ILAEGFDSVAEAEGLVLESLSSNARAVVSTLGGKCGAASGSIFMQGLVSGFRRQKLWMKIQLRRKPGGTCKTAIVATRKPDVVVKLQGWDPDHAKSVAQA SLSALKRLILSDKELQGWVVEAIGKTSSHQAGIQLPMVDPLSKQLLLKLHLDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	0	1
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	2.4	0.9420
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	6.3	0.9408
AT3G02100			UDP-Glycosyltransferase superf...		Lus10034699 [exp]	6.6	0.9021
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	9.6	0.9338
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	9.7	0.9160
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	11.5	0.9288
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10035720 [exp]	13.1	0.9314
AT1G49975			unknown protein		Lus10033771 [exp]	14.4	0.9242
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	14.7	0.9306
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10025302 [exp]	15.5	0.9147

Compare expression of checked genes

Lus10035389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.