Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32230 345 / 3e-111 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 287 / 2e-89 SRO1 similar to RCD one 1 (.1) AT1G23550 94 / 6e-21 SRO2 similar to RCD one 2 (.1) AT1G70440 89 / 3e-19 SRO3 similar to RCD one 3 (.1) AT5G62520 79 / 2e-16 SRO5 similar to RCD one 5 (.1.2) AT3G47720 75 / 2e-14 SRO4 similar to RCD one 4 (.1) AT5G43130 45 / 0.0001 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030991 [exp] 1082 / 0 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Lus10013012 [exp] 102 / 2e-23 AT1G23550 218 / 1e-68 similar to RCD one 2 (.1) Lus10030878 [exp] 96 / 2e-21 AT1G23550 223 / 1e-70 similar to RCD one 2 (.1) Lus10029152 [exp] 96 / 2e-21 AT1G23550 219 / 4e-69 similar to RCD one 2 (.1) Lus10030611 [exp] 96 / 4e-21 AT1G23550 219 / 7e-69 similar to RCD one 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G137200 [exp] 602 / 0 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.003G096700 [exp] 557 / 0 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.002G112300 [exp] 167 / 1e-45 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.015G076500 [exp] 100 / 1e-22 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.006G231100 [exp] 99 / 3e-22 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.006G231500 [exp] 98 / 3e-22 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.012G081100 [exp] 97 / 1e-21 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.018G055100 [exp] 95 / 4e-21 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231600 [exp] 84 / 2e-17 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.005G149701 [exp] 78 / 3e-17 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain PF02825 [flax] [poplar] WWE WWE domain
Representative CDS sequence Show only first row Show all	>Lus10035390 pacid=23170556 polypeptide=Lus10035390 locus=Lus10035390.g ID=Lus10035390.BGIv1.0 annot-version=v1.0 ATGGAAACCAAGTTAGGGAAGGTATTGGATAGGAGAAGCAAGGTTATTCTCGGCTTGAAGAGAAAGCGAGCATATCGCTCTGCAGCTTTTTTTGCTAGAG GCCCCCGGACAGTTTTGCCTCAGTGGCCTGCTGTGCATTCTACTCACTTCCTCGGGAAACGAAGGAAAGTCAGTGGGTGCCTGGGTGAGCCTGTGGTCTG CGGGTTTAAATGCAAGAAATCTCTACTCCAGCGTTATCTGAATTTTTCAAGGACTGGAGTGCCAGAACGTCTTATGTTCTATCAGAATGGCGAATGGACC AACTTTCCTGAAGATCTAGTCGCATTGTTAAGAGATGATCTCCGTTTGAAGAAGGGAGTTATTGAAGTTGAGTTTGAAGGGCATCACTGTATGCTTGATT TCTTGCATATGTGTCGACTTGACTTGAAGACAGGCTTGCAGCAACCGATTGCATGGATTGATGAAGCAGGTGCATGCTTCTTTCCTGAAATTTATGGTGA TGACGACGAACTAAGTAGTCTGAATGATGATGGAAACAGTGGTAACGGACCCCACGAGATTAAACTGCAACTTGAAATCGACATAAATGGGGTGGACCTG TCTAAACTAAAGGAGAGTAGTGGGGAGTCAACTGCTCTTGTCAAACATATCCATATTGCTTCCAGACCTGGTAGTAATCAATATGCTGTAGAGGTGGAAG ATAGTTCCAATAAGTCTGATGATTATGTTGTTGAAGCTGTTGTGGGAGACCAACAAACTAAACCAGTGCTAGTCTCTAAGGCTCAATCTTCTGATGTGAA ATTCGATTCTCAGTCTCTGCAGAAACTGTTTATTGATGGCATGAAATGTTTTGATGGTGCTGAGATACTTGAAATTATTCAATGCCAAAGCACTTCCTTA CAAGATCGATTAGAAATTTTTGAGAAGCAGATAAAGCTCACAGGAAAGTGCCGTGGTGATCCGAATGTTCGATATGCTTGGCTTTCTGCGGGTGCGGGTA CTGCTGCCATACTGATTAGTCAAGTGCCCAAAATGATTTTCTCAAATTATGCCAGTGATTGCGATATTGACGAAAATGGAACTCGACATTTGGTATTTTG TCGTGTGATAATGGGAAATATGGAACCTCTTCAGCATGGGAGCCGGATGTTCCATCCTAGCAGTCAAAAGTTTGATAATGGAGTGGATGATCTTCAAAAT CCAAGGCAGTATATAGTTTGGAATATGAATGCAAACACCCATATTTTCCCAGAATTTGTTGTTAGTTTCAAGGTCTCTTCCAATGGTAAAGGGCTTGCTG TTGGGAGTGAGAGCAAGTACGTTGCTTCAAGTGTCACCAGTGCTACACGGGGAGTTCAAGCGAGTTGGCCCATGAACAAATCTCCTAGGGTGGATTTAAA CTTGCCAGTACAATCCCCTACGGTTGACCTTAATTTAGCCCTTGCATCTGATCAGGCTAGCGAAAGTCAACCACTTTCAGATTGTGTGACATCTGTTGGG AATGGAAATAGTTTGGGTTCAAGCGATCCGGGGAATCGTAATTATCCTAATTGGATTCCGTTCCCTGTACTTTTTACTGCCATCTCAAAGAAAATTGCTC GGAGAGACATGGAGCTTATTATTTCTAGTTATGAGGAATTGCGGGCCAAAAGGATTAGCAGGAAAGACTTCACTAAACGGCTGAGATCAATAGTTGGGGA TACTTTGCTGAAGTCGGCATTATTGAATATGAACGAAGGGAAGGTATGA
AA sequence Show only first row Show all	>Lus10035390 pacid=23170556 polypeptide=Lus10035390 locus=Lus10035390.g ID=Lus10035390.BGIv1.0 annot-version=v1.0 METKLGKVLDRRSKVILGLKRKRAYRSAAFFARGPRTVLPQWPAVHSTHFLGKRRKVSGCLGEPVVCGFKCKKSLLQRYLNFSRTGVPERLMFYQNGEWT NFPEDLVALLRDDLRLKKGVIEVEFEGHHCMLDFLHMCRLDLKTGLQQPIAWIDEAGACFFPEIYGDDDELSSLNDDGNSGNGPHEIKLQLEIDINGVDL SKLKESSGESTALVKHIHIASRPGSNQYAVEVEDSSNKSDDYVVEAVVGDQQTKPVLVSKAQSSDVKFDSQSLQKLFIDGMKCFDGAEILEIIQCQSTSL QDRLEIFEKQIKLTGKCRGDPNVRYAWLSAGAGTAAILISQVPKMIFSNYASDCDIDENGTRHLVFCRVIMGNMEPLQHGSRMFHPSSQKFDNGVDDLQN PRQYIVWNMNANTHIFPEFVVSFKVSSNGKGLAVGSESKYVASSVTSATRGVQASWPMNKSPRVDLNLPVQSPTVDLNLALASDQASESQPLSDCVTSVG NGNSLGSSDPGNRNYPNWIPFPVLFTAISKKIARRDMELIISSYEELRAKRISRKDFTKRLRSIVGDTLLKSALLNMNEGKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	0	1
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	1.0	0.9187
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	3.7	0.8799
AT1G01770			unknown protein		Lus10014782 [exp]	4.0	0.8506
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	6.0	0.8543
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	6.2	0.8449
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	6.3	0.8324
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	6.5	0.8507
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	6.7	0.8051
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	7.3	0.8505
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	7.3	0.8603

Compare expression of checked genes

Lus10035390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.