Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) AT3G17800 352 / 1e-118 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G48450 349 / 9e-118 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G07310 176 / 2e-51 Protein of unknown function (DUF760) (.1) AT5G48590 152 / 2e-42 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030993 [exp] 699 / 0 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 470 / 4e-168 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 342 / 6e-115 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 338 / 3e-113 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10025896 [exp] 203 / 3e-61 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 196 / 2e-58 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 175 / 7e-51 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 171 / 3e-49 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 169 / 1e-48 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097400 [exp] 484 / 5e-171 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 356 / 1e-120 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 342 / 2e-115 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.002G247700 [exp] 191 / 1e-56 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10035392 pacid=23170528 polypeptide=Lus10035392 locus=Lus10035392.g ID=Lus10035392.BGIv1.0 annot-version=v1.0 ATGCAGGCAGCTGGAGCATATGCGATGGCCGAGGCGCTGGCGGCGGTTCCGCCGCACGGATTCGGGCCGAGTCCAGAGCTACGCCACCGTTCTCTTACTA CCTTATCCACTTCCGTTCGATTCCCACACCTACTTCCGCGGCGAACTGGCAGTAAGTTCCTCGGCCGCTTGGTCGTGAGAGCGTCTGGGAATTCAGGCGA CTCTTCCTCTACTGCCCCGCTTCCTCCGCTACAGTTTGAATCTCCCGTGGGACAGTTTCTGGAGCAGATTCTGCAGTCGCATCCGCATTTGCTGCCTGCA GCTATTGATCAGCAGCTCGAGAATCTTGAGACTGAGAGAGAGTCTCAGAAAGAAGGAAGCGCCGCTCCTGCTAGTCAGGATCCACTTTACAGGAGGATAG CCGAGGTCCGGGAGAATGAAAAGAAGAAGGCACTAGAAGAGATCATCTACTCCTTGATCGTACAGAAATTCCTGGAAAAGGGTATCTCCATGATACCAAG GATAACAACAACCTCAGAACCTGGCGGACGAGTGGACTTCTGGCCAAACCAGCAGCATAAACTGGAGTCTGTCCACTCCACTGAAGTCCTGGAAATGATA CAAAGCCACTTATCTCTCCTCTTAGGGGATCACCAATCAGTTGGTCCCCTGGATACCATAATACAGATCAGCAAGATCAAAGTTGGCAAGCTATATGCAG CTTCAATCATGTACGGATACTTCCTTAGAAGAATTGACCAGAGGTTCCAGCTCGACAGGGCCATGAACACCCTTCCCGAAGGCTACGACGAAAATCGAGC AAGGTACGAAGAGCTGAGCTCCAACGCCAAAGGGCTCGTGGACCCACAATCCTTGCTAACCATGATGCCGGATGGTAGCAGAGGCGACGAATATGGCGAC GAGGACGGGAAAACGTATAGGCTGAGGTCGTACGTGATGTACTTGGACGCGGAGACACTTCAGCGATACGCAACGGTGAGATCGAAGGAAGCCGTGGGTC TGATCGAGAAGCAGACTCAGGCGCTCTTCGGTAGGCCGGAGATAATGGTTGCTGAGGATGGATCGCTTGGTGCGAGTAATGATGAAGTGATTACAGTGGC CTTCTCTGGGTTGACAATGCTGGTTTTGGAAGCTGTATCTTTTGGATCTTTCATGTGGGATTCTGAGAGCTATGTTGAGTCCAAGTACCAGTTCCTCAAC GGCTGA
AA sequence Show only first row Show all	>Lus10035392 pacid=23170528 polypeptide=Lus10035392 locus=Lus10035392.g ID=Lus10035392.BGIv1.0 annot-version=v1.0 MQAAGAYAMAEALAAVPPHGFGPSPELRHRSLTTLSTSVRFPHLLPRRTGSKFLGRLVVRASGNSGDSSSTAPLPPLQFESPVGQFLEQILQSHPHLLPA AIDQQLENLETERESQKEGSAAPASQDPLYRRIAEVRENEKKKALEEIIYSLIVQKFLEKGISMIPRITTTSEPGGRVDFWPNQQHKLESVHSTEVLEMI QSHLSLLLGDHQSVGPLDTIIQISKIKVGKLYAASIMYGYFLRRIDQRFQLDRAMNTLPEGYDENRARYEELSSNAKGLVDPQSLLTMMPDGSRGDEYGD EDGKTYRLRSYVMYLDAETLQRYATVRSKEAVGLIEKQTQALFGRPEIMVAEDGSLGASNDEVITVAFSGLTMLVLEAVSFGSFMWDSESYVESKYQFLN G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	0	1
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	1.4	0.9879
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	1.4	0.9897
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	2.0	0.9869
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	4.6	0.9877
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	5.3	0.9795
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	5.9	0.9848
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	6.9	0.9783
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	6.9	0.9795
AT5G60760			P-loop containing nucleoside t...		Lus10016117 [exp]	7.4	0.9688
AT1G76600			unknown protein		Lus10033761 [exp]	7.4	0.9786

Compare expression of checked genes

Lus10035392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.