Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 64 / 1e-12 B3 Domain of unknown function (DUF313) (.1) AT2G32645 59 / 3e-11 Domain of unknown function (DUF313) (.1) AT3G24850 55 / 4e-09 B3 Domain of unknown function (DUF313) (.1) AT5G24050 46 / 4e-06 B3 Domain of unknown function (DUF313) (.1) AT1G05920 42 / 5e-05 B3 Domain of unknown function (DUF313) (.1) AT2G24670 40 / 0.0004 B3 Domain of unknown function (DUF313) (.1) AT2G31420 39 / 0.0008 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035394 [exp] 287 / 6e-101 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 254 / 8e-85 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 197 / 4e-63 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 117 / 3e-32 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 112 / 2e-31 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 113 / 2e-30 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 79 / 6e-19 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 66 / 5e-13 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 55 / 1e-09 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014200 [exp] 58 / 2e-10 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 56 / 2e-09 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 50 / 2e-07 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 40 / 0.0003 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10035393 pacid=23170602 polypeptide=Lus10035393 locus=Lus10035393.g ID=Lus10035393.BGIv1.0 annot-version=v1.0 ATGACTGATCTGAGTTTCCAAAACCTCCGCCTGTCAATCCCGCTAAATCAAGTCGCTCACGACTTCCTCACCAACGAAGAGAAGCTTCAGTTCGACAATG GAGAGAAGATCAAATTAGGGTCTTTCTTGGACCCAAATCTGGAAGCCTTCTCCGGAGGTCAATTAACCAAGTGGAGGATGAAAAGCTCCATAATTTACAA TGTAATCGGAGTTTGGAGGTCCGTTCTGGCGAAGCGGCAACATAAGCGGTTGAGTCTGGAAGAAGGGGATGAGGTTGAGTTGTGGAGCTTCAGAAATTCT TCAGGGGAGCTCTGTTTTGTGATGATTAGCCATGACACTAGAAGAAGAAGTGCTGCTGCTGCTGATGATCATGCTGATTTCGATGAGAATAAGAAGGGAA TTATTCCAGTTGATAGCGGGAGTGGAACAAGTACTCTGACTCATGAAGAAGAAAACCCTCTTATTGTTGACAGTATTGCTACTCGTCTTGATTTGGATCT GAAGTTGTAA
AA sequence Show only first row Show all	>Lus10035393 pacid=23170602 polypeptide=Lus10035393 locus=Lus10035393.g ID=Lus10035393.BGIv1.0 annot-version=v1.0 MTDLSFQNLRLSIPLNQVAHDFLTNEEKLQFDNGEKIKLGSFLDPNLEAFSGGQLTKWRMKSSIIYNVIGVWRSVLAKRQHKRLSLEEGDEVELWSFRNS SGELCFVMISHDTRRRSAAAADDHADFDENKKGIIPVDSGSGTSTLTHEEENPLIVDSIATRLDLDLKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	0	1
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	8.9	0.6970
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	9.8	0.6959
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10039940 [exp]	14.1	0.6575
AT3G25160			ER lumen protein retaining rec...		Lus10038198 [exp]	17.3	0.7246
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	25.5	0.7163
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	31.1	0.6549
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	33.6	0.7003
					Lus10000293 [exp]	40.1	0.6101
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	115.2	0.6284
AT3G60520			unknown protein		Lus10042880 [exp]	122.0	0.6320

Compare expression of checked genes

Lus10035393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.