Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 59 / 6e-11 B3 Domain of unknown function (DUF313) (.1) AT2G32645 54 / 2e-09 Domain of unknown function (DUF313) (.1) AT3G24850 54 / 5e-09 B3 Domain of unknown function (DUF313) (.1) AT5G24050 48 / 7e-07 B3 Domain of unknown function (DUF313) (.1) AT1G05920 45 / 5e-06 B3 Domain of unknown function (DUF313) (.1) AT2G24670 41 / 0.0001 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035393 [exp] 283 / 2e-99 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 259 / 5e-87 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 194 / 5e-62 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 112 / 4e-31 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 113 / 2e-30 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 111 / 9e-30 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 75 / 1e-17 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 67 / 2e-13 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 51 / 3e-08 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014200 [exp] 54 / 5e-09 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 52 / 4e-08 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 51 / 8e-08 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 40 / 0.0003 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10035394 pacid=23170563 polypeptide=Lus10035394 locus=Lus10035394.g ID=Lus10035394.BGIv1.0 annot-version=v1.0 ATGACTGATCTGAGTTTCCAAAACCTCCGCCTGTCAATCCCGCTAAATCAAGTCGCTCACGACTTCCTCACCAATGAAGAGAAGCTTCAGTTCGACAATG GAGAGAAGATCAAATTAGGGTTTTTCTTGGACCAAAATCTGGAAGCCTTCTCCGGAGGTCAATTAACCAAGTGGAGGATGAAAAGCTCCATAATTTACAA TGTAATCGGAGTTTGGAGGTCCGTTCTGGCGAAGCGGCAACATAAGCGGTTGAGTCTGGAAGAAGGGGATGAGGTTGAGTTGTGGAGCTTCAGAAATTCT TCAGGGGAGCTCTGTTTTGTGATGATTAGCCATGACACTAGAAGAACTGCTGCTGCTGATGATCATGATGATTTTGATGAGAATAAGAAGGGAATTATTC CAGTTGATAGCGAGAGTGGAACAAGTACTCTGACTCATGAAGAAGAAAACCCTCTTGTTGATGACAGTATTGCTACTCGTCTTGATTTGGATCTGAAGTT GTAA
AA sequence Show only first row Show all	>Lus10035394 pacid=23170563 polypeptide=Lus10035394 locus=Lus10035394.g ID=Lus10035394.BGIv1.0 annot-version=v1.0 MTDLSFQNLRLSIPLNQVAHDFLTNEEKLQFDNGEKIKLGFFLDQNLEAFSGGQLTKWRMKSSIIYNVIGVWRSVLAKRQHKRLSLEEGDEVELWSFRNS SGELCFVMISHDTRRTAAADDHDDFDENKKGIIPVDSESGTSTLTHEEENPLVDDSIATRLDLDLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	2.8	0.8780
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	3.5	0.8900
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	4.2	0.8872
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	5.5	0.8465
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	6.7	0.8855
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	8.9	0.7981
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	9.6	0.7956
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	16.6	0.7948
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	21.9	0.8041
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	24.7	0.8024

Compare expression of checked genes

Lus10035394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.