Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05070 463 / 9e-159 DHHC-type zinc finger family protein (.1) AT2G40990 432 / 2e-146 DHHC-type zinc finger family protein (.1) AT3G56920 407 / 7e-138 DHHC-type zinc finger family protein (.1) AT3G56930 412 / 1e-137 DHHC-type zinc finger family protein (.1.2) AT3G26935 325 / 1e-104 DHHC-type zinc finger family protein (.1) AT3G48760 318 / 2e-101 DHHC-type zinc finger family protein (.1) AT4G24630 311 / 1e-99 DHHC-type zinc finger family protein (.1) AT5G41060 306 / 1e-97 DHHC-type zinc finger family protein (.1.2) AT5G50020 302 / 1e-95 DHHC-type zinc finger family protein (.1.2) AT3G56950 282 / 7e-91 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030997 [exp] 1121 / 0 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 612 / 0 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 612 / 0 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 407 / 5e-136 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 384 / 2e-123 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10035177 [exp] 342 / 5e-111 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027275 [exp] 332 / 5e-110 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10032009 [exp] 338 / 1e-109 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10038989 [exp] 327 / 5e-108 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025200 [exp] 514 / 7e-179 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 506 / 9e-176 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 409 / 3e-136 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 392 / 2e-129 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.016G024900 [exp] 337 / 6e-112 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.015G101900 [exp] 334 / 1e-107 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 328 / 9e-106 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 324 / 3e-104 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 323 / 1e-103 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 323 / 2e-103 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035395 pacid=23170633 polypeptide=Lus10035395 locus=Lus10035395.g ID=Lus10035395.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCTGCTGCTGGTGCTGGGCCGTCGAAGGCTCGGCTTCTGGTGTCTGATTTCGCGATGGCGTTCATGTGGGTGAGTTCGGGCCCACTGGTGA GGATGTTCGTGTACGAGGTTCTGGGCATGGGTTCCGGCGACCCGGTATCAGAAATCGTAAAGTGTGGTTGCTCCATCACCAACATGTTCGTCTTCGCACT TCTGGGTAAACTCACCAGAGGCGGCAGTTACAACCCTCTCAATGTACTCTCCGATGGCATTTCTTCAGATTTCGCTCGCTTCCTTTACGTCTTTGGCGCC CGAATCCCTGCTCAGGTACTTGGATCTATTTCCGGGGTTAGGTTCATGATAAAAACCTTCCCTGAAATAGGACTCGGTCCACGCCTGCAAGTGGAGATCC ACCATGGCGCTCTAACAGAAGGGCTACTGACATTCGCTATCGTAACAATCTCTCTCGTGCTAGCAAGGAACATCCCTGGCAATTTCTTCATGAAAACTTG GATCTCAAGTGTCATGAAAGTCACACTCCATATACTTGGCTCGGACCTTACCGGCGGCTGTATGAACCCTGCCTCTGTGATGGGATGGGCCTATGCACGT GGGGACCACTTCACGAAGGAGCACATATTCGTGTACTGGCTTGCCCCAGTTGGAGCGACCCTTTTAGCAGCTTGGATATTCAAACTGCTCGTTCCGCCTT TGAATGAAATTGCAGAGAAACAGAAGCTGAAGAAGGTTTCACAATTCCTTCCTCTAGCTAAACCACCACATTCCTTAATGGACCCTCCCAATCACAATAC CTTCAGGCTTTATCAGCTTTGGAAGGGAAACAACAAATTTTTATGTGGTGGGAGATTAGTGTTTGGTCCAGATGCAGCATCGTTGTTCTTAACATCGTTC TTGATCGGAGGCCCTGGGGTTGCCTTCTGCATCAGAATGTTGTTGATGATTGGAAAGGATCCTGCTTTTAACTACCCAGTACTCGTTGGTGGATGGGTTC TCCTCGTCATGGACTTTGCATTTCTATTCATGACATCAAGTAGGGATCCAGGGATCATCCCGAGGAACGCACACCCACCTGAGATGGACGAGGCACTGAC GACGTCATCGATGGAGTGGGTCAACAACTACAACAGACTACAAACCTTGAAGCTTCCTCGAACAAAAGATGTGTTTGTGAATGGGTATAGTGTTAAGGTT AAGTTCTGCGACACTTGTTTGTTGTATCGTCCGCCAAGGGCTTCCCATTGCTCCATCTGCAACAACTGTGTCCAGAAATTTGATCACCACTGCCCTTGGG TGGGTCAATGCATTGCCTTGCGGAACTACCCATTTTTCATATGCTTCATAACATCATCAACTATGTTATGCTTATATGTGTTCGTGTTCTCGTGGATCAA CATCATCAGACAAGAGGGAACCTTGTGGAGTGTTCTAACCAATGACGTCATCTCCCTCAGCTTAATCATTTACTGCTTCATAGCTGTTTGGTTTGTCGGA GGACTCACCGTTTTCCACTTCTACTTGATCTTTACAAACCAAACGACTTACGAGAACTTCCGATACCGATACGATAAGAAGGATAACCCTTTCAGAAGAG GAGTGCTTCATAACTTGAAGGAAGTGTTCGTATCGGACATTCCTGCCTCGGCAGTGAACTTCAGGGAATGGGTGGCACCGGAGATGATCGCCAACAACGA TTCGGTGAGGAGTCGAGACATGAGTGGGAACACGTTCGGGGGATCCAGGGAGAGGTTCGATTTGGAAATGGGAGGTGGGGATCATCATAAGCTTGGGAAA GAACGAATCCCGACCCTTTTGCAGAGCTTGGATTACAATAGTTTTAATCACGGTGATCATGACCGCCTTGACGATGATTTAAAGAGGAAAGTAAATAGTT GTGATAGCATCATCATTCGAGATCAAGATCGAGATCTTACTATCGATCGATATGGGTTAACCGACAATCAACATAGTCCGCGCCACAACTTAATGAACGA GGCCGCAACTCTCCAAGAACGACCGATACATTAG
AA sequence Show only first row Show all	>Lus10035395 pacid=23170633 polypeptide=Lus10035395 locus=Lus10035395.g ID=Lus10035395.BGIv1.0 annot-version=v1.0 MAPAAAGAGPSKARLLVSDFAMAFMWVSSGPLVRMFVYEVLGMGSGDPVSEIVKCGCSITNMFVFALLGKLTRGGSYNPLNVLSDGISSDFARFLYVFGA RIPAQVLGSISGVRFMIKTFPEIGLGPRLQVEIHHGALTEGLLTFAIVTISLVLARNIPGNFFMKTWISSVMKVTLHILGSDLTGGCMNPASVMGWAYAR GDHFTKEHIFVYWLAPVGATLLAAWIFKLLVPPLNEIAEKQKLKKVSQFLPLAKPPHSLMDPPNHNTFRLYQLWKGNNKFLCGGRLVFGPDAASLFLTSF LIGGPGVAFCIRMLLMIGKDPAFNYPVLVGGWVLLVMDFAFLFMTSSRDPGIIPRNAHPPEMDEALTTSSMEWVNNYNRLQTLKLPRTKDVFVNGYSVKV KFCDTCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIALRNYPFFICFITSSTMLCLYVFVFSWINIIRQEGTLWSVLTNDVISLSLIIYCFIAVWFVG GLTVFHFYLIFTNQTTYENFRYRYDKKDNPFRRGVLHNLKEVFVSDIPASAVNFREWVAPEMIANNDSVRSRDMSGNTFGGSRERFDLEMGGGDHHKLGK ERIPTLLQSLDYNSFNHGDHDRLDDDLKRKVNSCDSIIIRDQDRDLTIDRYGLTDNQHSPRHNLMNEAATLQERPIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	0	1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	2.0	0.8595
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	12.0	0.8617
AT5G37480			unknown protein		Lus10001333 [exp]	17.2	0.8525
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	20.3	0.8429
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	22.1	0.8191
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	22.4	0.8418
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10018285 [exp]	23.1	0.8240
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	29.6	0.8535
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	30.5	0.8350
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10014651 [exp]	46.0	0.8119

Compare expression of checked genes

Lus10035395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.