Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61120 76 / 3e-15 unknown protein AT5G61090 68 / 2e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G16680 66 / 1e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 66 / 1e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 47 / 9e-06 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030998 [exp] 598 / 0 AT5G61120 71 / 1e-13 unknown protein Lus10020350 [exp] 64 / 6e-11 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10009530 [exp] 63 / 1e-10 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 53 / 2e-07 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040100 [exp] 155 / 1e-42 AT5G61120 127 / 1e-31 unknown protein Potri.003G091000 [exp] 62 / 2e-10 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G077900 [exp] 57 / 9e-09 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 56 / 1e-08 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G041900 [exp] 55 / 4e-08 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G189400 [exp] 53 / 1e-07 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 43 / 0.0002 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035396 pacid=23170534 polypeptide=Lus10035396 locus=Lus10035396.g ID=Lus10035396.BGIv1.0 annot-version=v1.0 ATGCAGGATCCTACAAGTTTTCCCCCCGAGCCCCAGAACAAAGTGGTGCTTCGAGAGCTAACCACAGCTGGTCCTTCTAGGAGCCGTTATCCCGTTAAAA GATATGTGAAGCTTAGCAAAGTCAAACCTTTAACTGAAGAGGAGGTGAAAAAATTAAGCTCAGGTGCTGAGATTGTTCGTACTTCGAAAACTACTAGTAT CAGTAGACCTAGACAAATGTCCCTTAAACATCCCAATGCCCCTGTGAAAGCAAACCCAAGAATCCCTTCTGGTTTAGCAAAGAATGGCAGAGACGGTGGT AGAAATATATACTTGAATTTCAGTCCTTCAGCAACCAGGAAATCAGAAGGCGTTACCAGTTGTGCTTCCTTGGACACTATGAAATTGGATGTTGAAGATA TACCGACTCTTGTCCAAAAGCTTAGGTTTTATGAGTCTTATTTCCCTGCTAAGTGTGCTTCTTGGACGGGAAGGTGCAAGATTCTTAATCATGCCGGAGG AGGTAAATTTCAGCTATCAAGCAGGGTGCGCGAAGCCTATGGCCTTTCACTTGAGTTGCCAGTAGAACTTCAGGCTCATCCTGCAGCAGAGATAAATTGT AAAGCCTATGAGCTTTCTTTGAAGATGGCAGCCGAACATGAGGTTGAGTTGCTTCCACGTTCTGATATTTGGACAGTCTTGTTCAATGATGATTCTCCTG ACTTGCGGGATATAGCATTGTACATTTTTGCTACTGCTGACACAAAGAGTTCCGAAGATAACTATGCTAAGTTGCTTGAATGCATCGAAGCTGAGGACTT GGTGATCAGAACTGACGTTGATGGTTTTGAACTGCTGATATTCTCATCGAAGCATCTACATACAGACATCCAAGATATCATTTGTCACTGGAGCAGGAAA CAGTTCTTCTGGGGGGTGTTTCAACAAGCTAAAGCTGTCGTTCAGGTAACTGTTGAAAAATAA
AA sequence Show only first row Show all	>Lus10035396 pacid=23170534 polypeptide=Lus10035396 locus=Lus10035396.g ID=Lus10035396.BGIv1.0 annot-version=v1.0 MQDPTSFPPEPQNKVVLRELTTAGPSRSRYPVKRYVKLSKVKPLTEEEVKKLSSGAEIVRTSKTTSISRPRQMSLKHPNAPVKANPRIPSGLAKNGRDGG RNIYLNFSPSATRKSEGVTSCASLDTMKLDVEDIPTLVQKLRFYESYFPAKCASWTGRCKILNHAGGGKFQLSSRVREAYGLSLELPVELQAHPAAEINC KAYELSLKMAAEHEVELLPRSDIWTVLFNDDSPDLRDIALYIFATADTKSSEDNYAKLLECIEAEDLVIRTDVDGFELLIFSSKHLHTDIQDIICHWSRK QFFWGVFQQAKAVVQVTVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61120			unknown protein		Lus10035396 [exp]	0	1
AT3G52610			unknown protein		Lus10014215 [exp]	3.5	0.9713
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	4.6	0.9681
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	5.1	0.9689
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	7.2	0.9677
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	10.7	0.9624
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	11.0	0.9629
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	11.5	0.9618
AT5G36000			unknown protein		Lus10004013 [exp]	13.4	0.9555
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	13.5	0.9523
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	14.7	0.9564

Compare expression of checked genes

Lus10035396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.