Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23270 499 / 3e-161 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 483 / 4e-154 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G10250 347 / 6e-112 Plant protein 1589 of unknown function (.1.2) AT5G42140 361 / 5e-109 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 340 / 3e-101 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 318 / 4e-93 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G04090 289 / 2e-90 Plant protein 1589 of unknown function (.1.2) AT1G69710 291 / 9e-84 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 274 / 1e-77 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G65920 259 / 1e-72 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030999 [exp] 885 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 699 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10027273 [exp] 696 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10031001 [exp] 554 / 0 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10042800 [exp] 351 / 2e-105 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 349 / 2e-104 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 349 / 4e-104 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 346 / 4e-102 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10039525 [exp] 301 / 3e-87 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167500 [exp] 562 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.006G041200 [exp] 385 / 8e-127 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 379 / 2e-124 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.005G190000 [exp] 351 / 7e-105 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 347 / 1e-103 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 296 / 3e-85 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 290 / 4e-83 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 266 / 1e-74 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 259 / 2e-72 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 258 / 4e-72 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0390 [flax] [poplar] PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526) CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10035397 pacid=23170675 polypeptide=Lus10035397 locus=Lus10035397.g ID=Lus10035397.BGIv1.0 annot-version=v1.0 ATGTCGAATGCACCAGTGAGAAGGGTCTCACCCAAAGACATACAAGTCGTTCAAAATCTCATAGAACGGTGTCTCCAATTGTACATGAATCAACAAGAAG TTGTCGAAACATTATTGGCCCAAGCAAAGATAGAGCCTGGTTTTACAGAACTTGTTTGGCGAAAGCTCGAAGAAGAAAATCGTGACTTCTTTAAAGCTTA TTATCTGAGGTTGGTAGTGAAGCACCAAATAATGGAATTTAACAAGCTGCTTGAGCAACAGGCGCAGTTGATGCACCAGATAAATCCAACTGGAGTTGCG TCAATGACTACTCCTAATGGGGCTCAGCTTCCACCATTGCCGCAGAATTCCTCATGCTATGTCTCCGAACAGGCACATGGAGCCTTGAGATCAGATAACA TGCATGGGTCCATTGGTTCTGGCGTTCCTAATGGATTCAGCAACGGTGGATCCTCACTCCATCCTAGTATGCAAACTGTTCTTGACATTTCAGCTCATGC AAATAGAATTGATTCCTCGGCAAACATGCTTGCAACTCAACGCTCGAACTTGGCTGTGATGCAAGGAATGAATGGAGCTATAAAATCTGAAGCTGGTTAC ACTGGCACTACGTCATATGTGGTGGGAACTGGTGGAAATGTTATAGAAGCACGTCCATCCATTGCGGATGCATCTGTTGCATCCTTTAGCAGTGTAGGAT CCAGCTCCCAAGCCATTAATGAGCCTCTTCTTGATACAGACATATCTTCTTTTGGCTTTTTGGGACAGATTCCTCGGAATTTCAGTCTTTCAGATTTGAC AGCAGATTTCAATCAGAGCTCAGATATACTTGAAAACTATGCTAGATCACCCTTCTTGCCTCAGGAAAATGAGTCTTTCTTGGATTCCCGTGAAAGAGAG CATCAAGGAGACAGCCGATTGGATACCATATCAGAAGGAGTTCTCGCGGTTACTAATGCTGAATTTGTGGCGTGTGGCGAGCATCACACATGTGCTGTAG CATCGTCTGACTTGTTTACGTGGGGTGATGGCAGTCATAATGCTGGACTTCTTGGTCATGGAAGTGATGTTAGCCATTGGATACCCAAAAGGGTATCCCG TGCTTTAGAAGGACTTCAGGTTCTAACTATTGCTTGTGGCTCGGGGCATTCAGCTCTAGCAACTTCAAGTGGCAAACTGTTCACTTTTGGAGATGGGGCC TTTGGTGTTCTTGGCCACGGGGACCAAGAAACTGTTGCTTATCCGAAAGAAGTTCAGCTGTTAAGTGGGTTAAGGACCATGAAAGTTGCTTGCGGTGTAT GGCACACAGCAGCTATAGTGGAGGTTATGGGACAGCCCGGTGCAGCCATGTCATCTAGAAAGCTTTTCACTTGGGGCGACGGTGCCAATGGAAGATTGGG ACATGGAGACACAGAGGATAGAAAATCTCCAACACTGGTGGAAGCACTCAAGGACAAGCATGTCAAAAGCATATCATGCGGATCGAATTTCACGTCCAGC ATATGCATCCATAAATGGATTTCAGGAGCTGACCAGTCGGTTTGTTCGGGTTGTCGGCTAGCATTCGGTTTTACTAGGAAGCGGCACAATTGCTACCACT GCGGATTGGTTCATTGCCATTCTTGCAGCTCTAAGAAGGCAATGAGAGCTGCCTTAGCCCCAACACCTGGGAAACCACCTCGAGTCTCCGATGCTTGTTA TGCAAAACTCAAAGCTGGCGAGTCTGGTAACTCTAATATGAACAGGAAACATACAACAAATCCGCGCCGGTCAGTGGACATGAGTTCAAGAATGGGTTTC CCTTTCCGGCCCTCTAGAGTTTTGTTGTCTCCTACTACTGAGCCTGTAAAGTACCTGGAGGTCAAACATGGAAAGCCTGGGATGAGATGTGACGATTCCT CCACAGTACGAGCCTCCCAAGTTCCTGAACTTACGCAACTAAAAGACGTAGCATTTCCAAGTTCACTAAGTGCCATGCAAACAGCGTTGAAGCCTAATCC GGTTTCGACATATCAGCCATCGCCACAGCCTATGATCTCAGCTCAGCCAGCCAGCAACTATAGACCTTCTTCACCGTACAGAAGACCGAGCCCTCCACGA TCTGTAGGTAGTGGGGTCTCGAGGAGTGTCATTGACAGCTTGAGGAAAACGAACGATATCATGAAGCAAGACATGGCAAAGCTGCAAAATCAACTAAAGG AAGTAAAAAACCAGCTGCCTCCTGATGTACAAGATGCTGAGACGCTGAATGTCATCAACAATCAAATAGAAGCTTTCCTGAATGAAAACAAACCATCCGA ATTGCCGTCAAGCTTGGTGCAAAAAGGACCGGCTGAGGCATCATCCGAACCCAAGAAAGACGATTCACATAATGCTGCAGCAGACGCATCAACCAACGAA CACAATCCTGAAAGCGACACCAAAATAAAGCTGGAGACATCGACGTCGAAAAAGGACTCGCAGAGAGAAAGCATCGAACAGTTTGAGCCAGGAGTGTACG TGAATTTCGTACAGCATCCCAGTGGAACGAAGATCTTCAAACGAGTCAGATTCAGCAAGAGGAAGTTTCAAGAGCAGCAGGCAGAAGTGTGGTGGAAGGA GAACAAAGAGAGGCTTCTTAAGAGATACGTTCCTGCAAAATCAGGGAGTTCTTCTCATGCACCAACTACTACTACTTCAAGTCCTGCTCCGACTGAATCG CCAGGAAATGCTACTGAGGAAACAAGTGTAGTAGAGACACCTGAAACTTAG
AA sequence Show only first row Show all	>Lus10035397 pacid=23170675 polypeptide=Lus10035397 locus=Lus10035397.g ID=Lus10035397.BGIv1.0 annot-version=v1.0 MSNAPVRRVSPKDIQVVQNLIERCLQLYMNQQEVVETLLAQAKIEPGFTELVWRKLEEENRDFFKAYYLRLVVKHQIMEFNKLLEQQAQLMHQINPTGVA SMTTPNGAQLPPLPQNSSCYVSEQAHGALRSDNMHGSIGSGVPNGFSNGGSSLHPSMQTVLDISAHANRIDSSANMLATQRSNLAVMQGMNGAIKSEAGY TGTTSYVVGTGGNVIEARPSIADASVASFSSVGSSSQAINEPLLDTDISSFGFLGQIPRNFSLSDLTADFNQSSDILENYARSPFLPQENESFLDSRERE HQGDSRLDTISEGVLAVTNAEFVACGEHHTCAVASSDLFTWGDGSHNAGLLGHGSDVSHWIPKRVSRALEGLQVLTIACGSGHSALATSSGKLFTFGDGA FGVLGHGDQETVAYPKEVQLLSGLRTMKVACGVWHTAAIVEVMGQPGAAMSSRKLFTWGDGANGRLGHGDTEDRKSPTLVEALKDKHVKSISCGSNFTSS ICIHKWISGADQSVCSGCRLAFGFTRKRHNCYHCGLVHCHSCSSKKAMRAALAPTPGKPPRVSDACYAKLKAGESGNSNMNRKHTTNPRRSVDMSSRMGF PFRPSRVLLSPTTEPVKYLEVKHGKPGMRCDDSSTVRASQVPELTQLKDVAFPSSLSAMQTALKPNPVSTYQPSPQPMISAQPASNYRPSSPYRRPSPPR SVGSGVSRSVIDSLRKTNDIMKQDMAKLQNQLKEVKNQLPPDVQDAETLNVINNQIEAFLNENKPSELPSSLVQKGPAEASSEPKKDDSHNAAADASTNE HNPESDTKIKLETSTSKKDSQRESIEQFEPGVYVNFVQHPSGTKIFKRVRFSKRKFQEQQAEVWWKENKERLLKRYVPAKSGSSSHAPTTTTSSPAPTES PGNATEETSVVETPET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23270			Regulator of chromosome conden...		Lus10035397 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	4.1	0.9256
AT2G31130			unknown protein		Lus10017672 [exp]	8.8	0.9086
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	13.4	0.9030
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	14.3	0.9151
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	17.1	0.9002
AT5G66810			unknown protein		Lus10016766 [exp]	19.9	0.8879
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	20.2	0.9040
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	21.0	0.8920
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	22.7	0.9034
AT3G27870			ATPase E1-E2 type family prote...		Lus10022238 [exp]	25.3	0.8931

Compare expression of checked genes

Lus10035397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.