Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36160 61 / 8e-11 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G79580 60 / 2e-10 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G12260 58 / 9e-10 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT2G46770 58 / 1e-09 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G18060 57 / 2e-09 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT3G61910 57 / 2e-09 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT5G62380 56 / 6e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G71930 54 / 2e-08 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT5G66300 53 / 3e-08 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G32770 53 / 5e-08 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019638 [exp] 288 / 6e-99 AT1G12260 59 / 4e-10 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10014342 [exp] 200 / 4e-65 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10033652 [exp] 113 / 3e-30 AT1G62700 54 / 2e-08 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10033650 [exp] 93 / 1e-23 AT3G03200 50 / 8e-08 NAC domain containing protein 45 (.1) Lus10010294 [exp] 65 / 6e-12 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10001664 [exp] 62 / 5e-11 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10033676 [exp] 62 / 8e-11 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10017340 [exp] 61 / 1e-10 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10024601 [exp] 61 / 1e-10 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163600 [exp] 64 / 1e-11 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 61 / 9e-11 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028700 [exp] 61 / 1e-10 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 59 / 4e-10 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.013G113100 [exp] 59 / 5e-10 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.017G058100 [exp] 58 / 8e-10 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.015G127400 [exp] 58 / 9e-10 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.001G448400 [exp] 58 / 9e-10 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Potri.012G126500 [exp] 57 / 1e-09 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.005G116800 [exp] 57 / 2e-09 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10035400 pacid=23170611 polypeptide=Lus10035400 locus=Lus10035400.g ID=Lus10035400.BGIv1.0 annot-version=v1.0 ATGGACGATGAAGCGCACGCAGCTTTGCAGGAGAGAAGGAGGGCCTTTTTCGCATCCTTGAACCTGCATTCCGGAATAGTATTCCGCCCCACCGAGAAGC ACCTGTTCCAGTTCCTCATCCGGAAGATCAGAAGAGGAGACGCCGTGGACGACGAAGATCCGATCAAGGACTTAGACGTGTACTCTATGGAGCCGTGGGA TATCTGGAACAGATTCTCAGAGGATGAACGTTGCGATCTCTACTTCTACACCAAACTGAAGCGGAAGCCGTCGAATAACAAGATCGATCGCGGAGTTGCT GGTGGGAAAGGTCTGTGGCAAGGGGAGAGCGCTAAAAGGGATGTGCAAGTTAATTATACAAGGAAGCAAGCGTCGCGGGTATTGTCGAGGTGTATCTTGA ATATTGTGGTCAGGGAGTTCAGGTACAGCAACGGCGAGAAAGCAGAGGAGGATGGCCGTTGGATCATGACTGAGTACAGGGAAAATCCCGCTGGTGCCGT TGATTGGGTGATTTTCCGTCTCCGTCGAGATGGAAAGGCAGTAGCATCATCACCTTCAATCGGATCTCCGGCAACATCAGAGAGTGGGGGTAGTGCTTGT TGTACCGATGATGATGATGATCCGAAACGGGCGAAGATTTCTGATGCTGATTTTCAAGGTGGAGGAGGAGCTTCTAGTAGCGGTAATGTTGATAACTCCT GA
AA sequence Show only first row Show all	>Lus10035400 pacid=23170611 polypeptide=Lus10035400 locus=Lus10035400.g ID=Lus10035400.BGIv1.0 annot-version=v1.0 MDDEAHAALQERRRAFFASLNLHSGIVFRPTEKHLFQFLIRKIRRGDAVDDEDPIKDLDVYSMEPWDIWNRFSEDERCDLYFYTKLKRKPSNNKIDRGVA GGKGLWQGESAKRDVQVNYTRKQASRVLSRCILNIVVREFRYSNGEKAEEDGRWIMTEYRENPAGAVDWVIFRLRRDGKAVASSPSIGSPATSESGGSAC CTDDDDDPKRAKISDADFQGGGGASSSGNVDNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	0	1
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	2.2	0.8671
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	3.5	0.8858
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	6.6	0.8837
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	7.2	0.8694
AT5G41270			unknown protein		Lus10035306 [exp]	8.8	0.8445
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	15.9	0.8828
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	16.5	0.8373
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	16.7	0.8599
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10021371 [exp]	17.0	0.8197
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	24.7	0.8478

Compare expression of checked genes

Lus10035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.