Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77760 1243 / 0 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 1221 / 0 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT3G01910 203 / 1e-57 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT5G17770 147 / 3e-39 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 122 / 3e-30 FAD/NAD(P)-binding oxidoreductase (.1) AT2G32720 89 / 2e-20 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 88 / 3e-20 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 81 / 1e-17 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G53560 78 / 1e-16 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G60660 74 / 1e-15 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038977 [exp] 1366 / 0 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 1356 / 0 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1) Lus10031005 [exp] 718 / 0 AT1G77760 559 / 0.0 nitrate reductase 1 (.1) Lus10012532 [exp] 197 / 1e-52 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 185 / 2e-51 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10032048 [exp] 184 / 5e-51 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 169 / 1e-46 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10020310 [exp] 150 / 4e-40 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 148 / 2e-39 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172400 [exp] 1269 / 0 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 1264 / 0 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.001G330900 [exp] 201 / 5e-57 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.004G194400 [exp] 150 / 3e-40 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 144 / 3e-38 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 142 / 1e-37 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 139 / 2e-36 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 136 / 6e-35 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.002G242500 [exp] 85 / 4e-19 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 81 / 8e-18 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0072 [flax] [poplar] PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035402 pacid=23170508 polypeptide=Lus10035402 locus=Lus10035402.g ID=Lus10035402.BGIv1.0 annot-version=v1.0 ATGGCGGCTTACGTCGAAAACCGCCACCATTTCCACCTCCACCCTTACCCCTGCCCCAACTACTCCAAACCGGACACTTATAACCAACAACAATCCTCCT CCGAAGATGAATCATCATCATCATCCGACGAAGAAGAAGAAGCTGACTACATTGACCTAATAATTCGAACCTCCAACATCAACCTCATGGATCCTCCACC AGTAATAAAGGATCCCCGAGACGAGGCCACGTCGGACAACTGGGTCAAACGAAACCCAACCATGATCCGACTAACCGGAAAGCACCCGTTTAACTCCGAA CCCCCTTTGACTAAGCTCATGGACCACGGTTTCATAACCCCGGTGCCACTCCACTACGTCCGCAACCACGGCCCCGTCCCAAAGGCCACGTGGGATTCAT GGTCCATTGAAGTAAGCGGGTTGGTCAAACGACCGGCACACTTTACCATGGACCAGCTGGTCAACGAGTTCCCGACCAAGGAACTCCCGGTCACCCTGGC ATGCGCGGGTAACCGAAGGAAAGAACAAAACATGACCAAGAAGAGCGTGGGATTCAACTGGGGCTCGGCCGGGGTGTCCACTTCGGTGTGGAAGGGTGTA CCGTTGCGTGCTGTGCTCCAACGGTGTGGGATCAGGAGTGGGGCCATGTACGTTTGCTTCGAAGGGGATGAGGACTTGCCGGGTGGCGGCGGCGGCGGCG GAGGAATGACCAAGTACGGGACGAGTTTGGGGAAAGAGGTTGCGATGGATCCGGCACGTGACGTTTTGTTGGCGTACATGCAAAACGGGGAGCTTTTGAC TCCGGACCATGGGTTTCCGGTTCGGATCATTATACCCGGGTTTATTGGTGGGAGGATGGTGAAATGGTTGAGGAAGATAATTGTTACTAATAAGGAGTCC GGAAACTATTACCATTATAGAGATAATCGGGTTCTGCCGTCTCATGTTGATATCGAGCGTGCCAACTCTGAAGGTTGGTGGTACAAGCCGGAGTGCATAA TAAACGAGCTGAACGTAAACTCGGTCATTACGACGCCGTATCACGAAGAGATTCTGCCTATCAATTCATGGACTACTCAAAAGCCATACACGTTGAAAGG ATACGCATATTCTGGTGGAGGAAAGAAGGTCACACGTGTGGAGGTGACGATGGACGGAGGTGACACGTGGCGAGTGTGTGAGCTGGACCATAAAGAGAAG CCTAACGAGTACGGTAAATATTGGTGCTGGTGTTTTTGGTCGTTGGACGTGGAGGTGCTGGATCTGCTCGCAACCAAGGAGATTTCGGTTCGGGCTTGGG ATCAGAGTCTGAATACTCAACCCGAGAAACTCATTTGGAATCTCATGGGAATGATGAATAACTGTTGGTTCAAGGTGAAACCCAGCATCAGCAAGCGGCA CAAGGGAGAGATCGGGATCGTATTCGAGCATCCAACCGTCCCAGGAAACCAATCGGGCGGCTGGATGGCTAAAGAGAAGCACTTCGAAATTAGCTCATCT GACGCCAACTCCACTTTGAAAAAGAGCATCTCCACTCCCTTCATGAACGCTTCTTCATGCAAGACCTTTACCGCCGGAGAAGTAAATAAACACAACTCCG CAGACTCTGCTTGGATCATTGTCAACGGCCAAGTCTACGACTGCACTAGCTTCCTCAAAGACCATCCTGGTGGCTCTGACAGCATCCTTATCAACGCCGG CACCGACTGCACTGAAGAGTTCGAAGCCATCCACTCCAGCAAGGCTAGGAAGCTCCTTGAGGACTACCACATTGGTGAGCTGGTCAATATCCGTTCAAAT GTCTCGTTGCCCATTGGCTCGATCCATGACAGCACATCACGTAATTCGTCATTTTCCCAATTAGCCTCTGTTGTCGAGAAGACATTTTCGTCTGAAATGG AACATGTGGCATTGGCCCCGGGCGAGAAGGTTTTGTGCAAGTTGGTGGAAAAAGAATCGCTCTCTCGCAACGTTAGATTGTTTAGATTTGCGCTCCCTAA AGAAGATCAAGTGCTAGGACTTCCTGTCGGAAAGCACATATTCATATGTGCCAAGGTGGACGGGAAGCTCTGCATGCGTGCCTACACACCGACGAGCACT CTCGATGCAGTGGGCCATTTCGACCTTGTCGTGAAGATCTATCTCGAAAAGGTCCATCCAAAGTTCCCTAATGGTGGGGTCATGTCACAATATCTCGATT CATTAGAGATCGGGTCATCTGTAGAAGTGAAAGGACCATTGGGCCATATAGAGTATTTGGGACGAGGGAACTTCATGGTCCATGGGAAGCCCAAGTTCGG GAGGAAGCTTGCCATGCTAGCTGGTGGGACCGGGATCACACCGATATATCAGGTGGTCCAAGCCGTGTTGCGAAACCCAGAGGACCGAACAAAGATGTAC ATAGTGTATGCAAATCGAAGAGAGGACGACATCCTACTTAGGGATGAGCTAGACGAATGGGCCCGGACAGATGAGAGGTTGAAGGTTTGGTACGTGGTTA GTCAGTCATCGGCGAGGACAGGATGGCGGCACAGTACAGGACACATCACCGAAGGTATCCTAAGAGAGCATATACCTGGCGGATCAAATGGTGAGACATT GGCACTGGCTTGCGGACCGCCACCGATGATTCAGTTTGCGGTTCAACCGAATCTGGAAAAGCTGGGTTACGATGTAAAGGAGTCCTTGCTGGTATTTTAG
AA sequence Show only first row Show all	>Lus10035402 pacid=23170508 polypeptide=Lus10035402 locus=Lus10035402.g ID=Lus10035402.BGIv1.0 annot-version=v1.0 MAAYVENRHHFHLHPYPCPNYSKPDTYNQQQSSSEDESSSSSDEEEEADYIDLIIRTSNINLMDPPPVIKDPRDEATSDNWVKRNPTMIRLTGKHPFNSE PPLTKLMDHGFITPVPLHYVRNHGPVPKATWDSWSIEVSGLVKRPAHFTMDQLVNEFPTKELPVTLACAGNRRKEQNMTKKSVGFNWGSAGVSTSVWKGV PLRAVLQRCGIRSGAMYVCFEGDEDLPGGGGGGGGMTKYGTSLGKEVAMDPARDVLLAYMQNGELLTPDHGFPVRIIIPGFIGGRMVKWLRKIIVTNKES GNYYHYRDNRVLPSHVDIERANSEGWWYKPECIINELNVNSVITTPYHEEILPINSWTTQKPYTLKGYAYSGGGKKVTRVEVTMDGGDTWRVCELDHKEK PNEYGKYWCWCFWSLDVEVLDLLATKEISVRAWDQSLNTQPEKLIWNLMGMMNNCWFKVKPSISKRHKGEIGIVFEHPTVPGNQSGGWMAKEKHFEISSS DANSTLKKSISTPFMNASSCKTFTAGEVNKHNSADSAWIIVNGQVYDCTSFLKDHPGGSDSILINAGTDCTEEFEAIHSSKARKLLEDYHIGELVNIRSN VSLPIGSIHDSTSRNSSFSQLASVVEKTFSSEMEHVALAPGEKVLCKLVEKESLSRNVRLFRFALPKEDQVLGLPVGKHIFICAKVDGKLCMRAYTPTST LDAVGHFDLVVKIYLEKVHPKFPNGGVMSQYLDSLEIGSSVEVKGPLGHIEYLGRGNFMVHGKPKFGRKLAMLAGGTGITPIYQVVQAVLRNPEDRTKMY IVYANRREDDILLRDELDEWARTDERLKVWYVVSQSSARTGWRHSTGHITEGILREHIPGGSNGETLALACGPPPMIQFAVQPNLEKLGYDVKESLLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	0	1
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	1.0	0.9056
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041224 [exp]	2.4	0.8581
					Lus10025590 [exp]	3.7	0.8188
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	5.2	0.8265
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	5.3	0.8509
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	5.5	0.8725
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10032186 [exp]	9.3	0.7905
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	13.4	0.8235
AT1G72490			unknown protein		Lus10013160 [exp]	15.5	0.7871
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	16.6	0.7878

Compare expression of checked genes

Lus10035402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.