Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68310 199 / 1e-65 AE7 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) AT3G50845 151 / 8e-47 Protein of unknown function (DUF59) (.1) AT3G09380 137 / 2e-41 Protein of unknown function (DUF59) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031006 [exp] 253 / 3e-87 AT1G68310 233 / 1e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10035403 [exp] 248 / 8e-85 AT1G68310 230 / 7e-79 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Lus10014311 [exp] 154 / 7e-48 AT3G50845 253 / 1e-87 Protein of unknown function (DUF59) (.1) Lus10026019 [exp] 154 / 9e-48 AT3G50845 253 / 9e-88 Protein of unknown function (DUF59) (.1) Lus10031007 [exp] 56 / 3e-10 AT1G68310 70 / 2e-16 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098000 [exp] 234 / 1e-79 AT1G68310 257 / 2e-89 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.001G135800 [exp] 224 / 1e-75 AT1G68310 243 / 8e-84 AS1/2 ENHANCER7, Protein of unknown function (DUF59) (.1), Protein of unknown function (DUF59) (.2) Potri.005G123100 [exp] 157 / 2e-49 AT3G50845 237 / 2e-81 Protein of unknown function (DUF59) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein
Representative CDS sequence Show only first row Show all	>Lus10035404 pacid=23170505 polypeptide=Lus10035404 locus=Lus10035404.g ID=Lus10035404.BGIv1.0 annot-version=v1.0 ATGGTGTCGGGGTTGATAAACGCAAACCCTGTTATCTACGGAAAGAAAGAGCGACGACAAAGGCCTGCTTCTGTGTCTGATGTCGACGAGTACTTTGCTG AGGCCATCGATCAACTGGAAGTAGACATAAAGGATCCAGAACATCCTTACTCGTTGGAGGAGCTCAATGTAATATCGGAAGATGCGATTGAAGTGGATGA TAAACATAGCTATGTAAGGGCAACGTTTACTCCCACAGTCGAGCATTGTAGCATGGCGACTGTAATTGGTCTTTGCTTGCGAGCGCAGCTCATGAGAAGC CTACCATCGCGTTACAAGGTGGATATCAGGGTTGCGCCTGGAACACATACAACTGAAGCTGCAGTCTGTTCTGCATCATGGAGTTCTTCTAAGGCGCTCA TTTTAGGATCCCCTTTTGGCCTGCAGCCGGCTCTCCCTACCAACTTGAATGACCCTAATTCAACCACGTTTTGTCCTCTATTTATTACTGTAGTGAACAA AAAAGTAAACGACAAGGAGCAAATAGCAGCAGCTTTGGAGAACCCTAACGTTGTTGACGTGGTTGACAAATGCCTAGCTCCATCATACGCTTGA
AA sequence Show only first row Show all	>Lus10035404 pacid=23170505 polypeptide=Lus10035404 locus=Lus10035404.g ID=Lus10035404.BGIv1.0 annot-version=v1.0 MVSGLINANPVIYGKKERRQRPASVSDVDEYFAEAIDQLEVDIKDPEHPYSLEELNVISEDAIEVDDKHSYVRATFTPTVEHCSMATVIGLCLRAQLMRS LPSRYKVDIRVAPGTHTTEAAVCSASWSSSKALILGSPFGLQPALPTNLNDPNSTTFCPLFITVVNKKVNDKEQIAAALENPNVVDVVDKCLAPSYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035404 [exp]	0	1
AT2G31130			unknown protein		Lus10000990 [exp]	4.4	0.8341
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	8.1	0.7334
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	11.5	0.7708
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	18.6	0.8153
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	20.8	0.8146
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	21.8	0.7546
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	22.8	0.8044
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	23.7	0.8120
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	25.3	0.7589
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	32.2	0.7663

Compare expression of checked genes

Lus10035404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.