Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10740 190 / 1e-56 ATASD1, ARAF1, ARAF, ASD1 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) AT5G26120 184 / 2e-54 ATASD2, ASD2 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, alpha-L-arabinofuranosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031008 [exp] 297 / 2e-97 AT3G10740 783 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10027276 [exp] 157 / 3e-44 AT3G10740 922 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10038988 [exp] 157 / 3e-44 AT3G10740 972 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025500 [exp] 189 / 2e-56 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Potri.006G027700 [exp] 186 / 3e-55 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF06964 [flax] [poplar] Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035405 pacid=23170650 polypeptide=Lus10035405 locus=Lus10035405.g ID=Lus10035405.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGTCATTCACAGCTGCTTACTCTACAGCCGCCATTGCCATGCTCACAACAACAACACCAAATCCGCCGCCGCCGTTGCAGCAACTCTCAA AGTGGCCGATACCCTATTCGGGGATGGTTCAGTGGTTGCCGGAACCGTCCACTTTGAGAATTGGGAAGGCTTATCCTAAGATGAAGATCATATCCAACTG TGATTACACAGATCGAAATGTCAACAAACAGGAGCCAGCTGACTACTATGATTTTCCATACTTACAAATATTCCACAGTGAGTTGTTTGCGCAAAGGTTC ACATTCGATGAAGTGCCGCGCAAGGGTCCTAAGGCTTTCGTTAGTGAATATGCTGTATGGAAAGACGACGCTGGTAACGGTACTCTGAAAGCAGCACTAA GCGAGGCTGGATTTCTCATGGGGCTTGAAAAGAACAGTGACTATGTCGAGATGGCCTCATATGCACCACTGTTCATAAACACGAAGGATGAGATGTGGAC CCCAGATGCCATCTATTTCGATTCGTCGAGTGCGTATGGTACTCCAAGCTATTGGATGCAGACGTTCTTCTCGCAGTCCAACGGTGCAACTCTCCCCACT GCCGAACTCGATGACAAATCCTTTTCCGAAATGGCTGCCTCTGCCATCATTTGGAAAGATGCCTGA
AA sequence Show only first row Show all	>Lus10035405 pacid=23170650 polypeptide=Lus10035405 locus=Lus10035405.g ID=Lus10035405.BGIv1.0 annot-version=v1.0 MASSSFTAAYSTAAIAMLTTTTPNPPPPLQQLSKWPIPYSGMVQWLPEPSTLRIGKAYPKMKIISNCDYTDRNVNKQEPADYYDFPYLQIFHSELFAQRF TFDEVPRKGPKAFVSEYAVWKDDAGNGTLKAALSEAGFLMGLEKNSDYVEMASYAPLFINTKDEMWTPDAIYFDSSSAYGTPSYWMQTFFSQSNGATLPT AELDDKSFSEMAASAIIWKDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10035405 [exp]	0	1

Compare expression of checked genes

Lus10035405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.