Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40980 738 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031009 [exp] 1365 / 0 AT2G40980 764 / 0.0 Protein kinase superfamily protein (.1) Lus10037692 [exp] 547 / 0 AT2G40980 457 / 5e-152 Protein kinase superfamily protein (.1) Lus10015685 [exp] 541 / 0 AT2G40980 444 / 4e-146 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173100 [exp] 1066 / 0 AT2G40980 750 / 0.0 Protein kinase superfamily protein (.1) Potri.008G083300 [exp] 1046 / 0 AT2G40980 745 / 0.0 Protein kinase superfamily protein (.1) Potri.004G137600 [exp] 624 / 0 AT2G40980 523 / 1e-177 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035407 pacid=23170472 polypeptide=Lus10035407 locus=Lus10035407.g ID=Lus10035407.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCTCCGCATCAGCAACCGAGAATTGCATCTGACTCCGATGGTGCGGGTGGATCTCCAGACGTAGAATCAGTGGCGTCAGGCGCGAGGAGAT CGAGTATTACGTCAGTTAGCAAGTCTCACCGTCGTCGGGAGTTTCTAGACAGGTTAGTGGACTGCGAAACTTTAACTGACCGATTAGGGGACTGGTTCGA ATCCTTCTCCGGACCGAAAAGGCCTGCGCTTGAAGTACCTTTCGAGCTGATAGAGCTTCAGAAGTTTGACTATGCGTTGGAAGGGGTTTCGTTTCAGCAG TTGATCCGGATGCCAAGTGCTGTCTACGCATCTTCATCCGAGACAGTAGAAGCAACTGCCGTGTTAGCAGTTGAAGATTTTCTCCACGCAGGGGTGAAAG GATTGTGGGAGGCATTTTGGAGTCAGGATACTGGTGATGCTCCAATGCCATTCTCAGTTGCTTGTCTGTACAGTGAGAATTTGAAGTTCTACCAGGCTGA GAAAGCCATAACCAGTGGGAAGCTTGAAGGTTTATGTGCCACTGGTGTTTTAGTCAACAATCCTAGACATCCACATGGTAAATGGGATCAGATTCTTGAG TTGGCCCTTCTGAGGCCTGATATCGGCAGCCTAGCTGCCATGGGAGGCGACCCACAACCTTCTCAGGCTGTTTTAGGTGAGGCTCTCTTTTATGCTTTAC GCGTACTGTTATCCAGGAAGCTAGGGAGGTTTTACCCTGCTGAGAGTCTGGACACAGTCTTTGTTCTGCTTGTTGATTCCCAGTATGGAGGGGTTGTGAA AGTGGAAGGCGATGTAAATAAATTGGAGTTGGATGTGAATAACGTTTATGAAAGTTGTGCCAATTGGATAACAAGGCATTCTAGGATTTCAGTCTCTCCT ATAGATAGGATATGGAACAAACTTGGGAATGCCAACTGGGGAGACATTGGTGCTCTACAGATCCTCTTCGCAACGTTCCTCTCGATAATGCAGCTCGCAG GGACGCCAAAGCACTCAATCGAAGATTTAGCTGCTGACCATAGTTCTCGTCTACAAGCAAGAAGAATAGAGAGGCAGGTGGGGGATACTCTAGTTAATGG GAATGGAATGTTCCGGTTCCAGCAACACAGCATCACTCCCGAGATTGTGGAAGTTCCGGATGAAGCAGTTCATGTGGAGTCTGAAGAGCTTATCATGAAA TTGGAAATCGGTTCCGTCCTATGGTTGGATGACTCGGACCAACAGAAGGGTTACCAAATAAATGGTGACCTGTTCAATGGTGAACTAATGTATTATATCG CTTCACCTGTGGAAGATCCAAGTAAAACCTATTTCCTTTATGTTGGTTCTCACCCTTCGCAGTTTCAACCAGCGTCGGAGGACATGACGCTGTGGTATCA GGTCCAGAGACAGACTAAAATATTAACCATAATGAGGCAGAAAGGCGTGTCTAGCAAATACCTCCCTCAGTTGAGTGCTTCAGGCAGGATCGTCCACCCG GGTCAGTGCCGGAAACCTAGTTCCGGTGGCAATTGTGATCATCCTTGGTGCTCTACTCCGATCCTCGTCACCAGCCCGGTCGGTGAGACAGTCGCGGACA TGATAATGGGTGGAAGATTCGGCGCAGAAGAAGCAATCAGGTGTTGTCACGATTGTTTATCAGCACTTTCCGCAGCCTCCTCAGCTGGAATTAGGCACGG AGACATCCGGCCGGAAAACATTATCAGTTCAAGGTCCAGCAATCAGCATCCTCCTTACTTCGTCCTGATCGGCTGGGGTCATGCCATCCTCGAAGACAGG GACCGTCCAGCAATGAACCTCCATTTCTCGTCTACCTACGCTCTCCAAGAGGGCAAATTATGCTCAGCTTCTGATGCGGAGAGCCTCGTTTACATGCTTT ATTTTTCATCAGGTGGGGAAATGACTGATCTAGACTCGGTAGAAGGAGCATTGCAGTGGAGAGAGACCTCCTGGTCAAGGCGGCTGATCCAGCAGAGGCT CGGCGATGTATCGGCCGTGTTGAAAGCTTTTGCTGACTACGTGGATAGCCTCTGTGGAACTCCGTATCCCATTGATTACGACATTTGGATAAGGAGGTTG AGGAGGAACTTCCGCGATGAAGACCGTGGCAAAGAGATCGAATCGTCGGGTTAA
AA sequence Show only first row Show all	>Lus10035407 pacid=23170472 polypeptide=Lus10035407 locus=Lus10035407.g ID=Lus10035407.BGIv1.0 annot-version=v1.0 MAPAPHQQPRIASDSDGAGGSPDVESVASGARRSSITSVSKSHRRREFLDRLVDCETLTDRLGDWFESFSGPKRPALEVPFELIELQKFDYALEGVSFQQ LIRMPSAVYASSSETVEATAVLAVEDFLHAGVKGLWEAFWSQDTGDAPMPFSVACLYSENLKFYQAEKAITSGKLEGLCATGVLVNNPRHPHGKWDQILE LALLRPDIGSLAAMGGDPQPSQAVLGEALFYALRVLLSRKLGRFYPAESLDTVFVLLVDSQYGGVVKVEGDVNKLELDVNNVYESCANWITRHSRISVSP IDRIWNKLGNANWGDIGALQILFATFLSIMQLAGTPKHSIEDLAADHSSRLQARRIERQVGDTLVNGNGMFRFQQHSITPEIVEVPDEAVHVESEELIMK LEIGSVLWLDDSDQQKGYQINGDLFNGELMYYIASPVEDPSKTYFLYVGSHPSQFQPASEDMTLWYQVQRQTKILTIMRQKGVSSKYLPQLSASGRIVHP GQCRKPSSGGNCDHPWCSTPILVTSPVGETVADMIMGGRFGAEEAIRCCHDCLSALSAASSAGIRHGDIRPENIISSRSSNQHPPYFVLIGWGHAILEDR DRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFSSGGEMTDLDSVEGALQWRETSWSRRLIQQRLGDVSAVLKAFADYVDSLCGTPYPIDYDIWIRRL RRNFRDEDRGKEIESSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	0	1
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	1.7	0.9277
AT3G58050			unknown protein		Lus10017239 [exp]	2.8	0.8999
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	3.7	0.8925
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	4.5	0.9272
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10024146 [exp]	6.2	0.8625
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	6.3	0.8987
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	7.1	0.8852
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	8.7	0.8572
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	8.7	0.9030
AT3G58050			unknown protein		Lus10016244 [exp]	9.5	0.8899

Compare expression of checked genes

Lus10035407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.