Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40840 1078 / 0 DPE2 disproportionating enzyme 2 (.1) AT5G64860 84 / 1e-16 DPE1 disproportionating enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031010 [exp] 1498 / 0 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1) Lus10035845 [exp] 92 / 6e-19 AT5G64860 811 / 0.0 disproportionating enzyme (.1) Lus10036626 [exp] 74 / 2e-13 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G031700 [exp] 1107 / 0 AT2G40840 1492 / 0.0 disproportionating enzyme 2 (.1) Potri.016G028900 [exp] 1105 / 0 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1) Potri.007G081400 [exp] 86 / 3e-17 AT5G64860 849 / 0.0 disproportionating enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF02446 [flax] [poplar] Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence Show only first row Show all	>Lus10035408 pacid=23170570 polypeptide=Lus10035408 locus=Lus10035408.g ID=Lus10035408.BGIv1.0 annot-version=v1.0 ATGGCAAATTTGGGGATGTCTTTAGGGGCCAAATCAACGAAATCGGTGAAAGTGAGCTTTAGAATACCGTATTTCACCAACTGGGGTCAGAGCCTTGTTG TTTGTGGCTCTGAACCTGCGCTGGGGTCTTGGAATGTCAAGAGGGGCTTGTTATTGAGCCCTGTTCATCAGGATGATGAGCTTATCTGGTGCGGAACTGT GACGGTGCCGGAAGAGTTCAGCTGTGAGTACAGCTATTATGTGGTGGATGATGAGAAGAAAGTGACGAGGTGGGAGATGGGCAAGAAGCGTCAAGTGTTT CTGCCTAAAGGGATAAATGGTGGAGATATTGTCGAGTTTCGAGATCTCTGGCAGACGGGGGATGATGATATCCCTTTCAGAAGTTCCTTCAAAGATGTCA TCTTTAACTCAAGTTGGAAAATGAAAGTTGAGAGACCCTTAGGTGTGCAGAATAAGTTGGAGAAGGAAGATTCCGTTCTTGTCCATTTCAGGATTTGCTG TCCAAACATGGAGGAAGAGACTTGTGCAATGCCATGGCGAGGAACTGGTGTTTCTGTACCGATGTTCTCCGTTAGATCAGAACATGATCTTGGTGTTGGA GAGTTTCTTGACTTGAAACTTCTTGTTGACTGGGCCGTGGAATCTGGATTCCATCTAGTTCAGCTTCTCCCTATCAATGACACCTCTGTGAATGGGATGT GGTGGGACTCCTATCCGTACAGTTCACTGTCTGTATGTGCCTTGCATCCATTGTACCTGAGAGTTCAGGCACTTTCAGCAAATCTCCAAGCAGATGTGAA GAAAGAGATACAGGAGGCTAAGGAGAGGCTTGATGGGAAGGAAGTTGATTATGAGGCTAGTCTGGCTACTAAATTGTCGATTGCCAAAAAAGTATTCGCT AAAGAAAAGGACGCAGTACTAAACTCCAGCGCATTTCAGGAATTCTTCTCAGAAAATGAGGAGTGGTTAAAACCATATGCAGCCTTCTGTTTCTTGAGGG ACTTCTTTGAAACATCTGATCACAGCCAATGGGGCCGGTTTTCTGACTTTTCGAAAGAGAAGCTGGAGAAGCTTGTCTCAAAGGACAATCTGCACTATGA CATCATTTGTTTTCATTACTATATCCAGTTCCACTTACATATTCAGTTGTCTGAAGCTGCACAATATGCCAGAAAGAAAGGTGTGGTATTGAAGGGAGAT TTGCCTATTGGTGTTGACAGAAATAGTGTGGATACGTGGGTTTATCCCACTTTATTCCGTATGAATACATCCACTGGAGCTCCACCGGATTACTTTGACA AAAACGGGCAGAACTGGGGCTTTCCAACTTATAACTGGGAGGAGATGTCAAAAGACAATTATGGTTGGTGGCGTGCTAGATTAACACAGGACGAGCTGGA GAAAGAAGGAATTTGGGACTTTGATCGTTTGAGTCGCCCATACATTCGTCAAGAATTCTTACAGGAAAAATTCGGCAAGTTCTGGGCAGTTATTGGTTCC AGTTTCCTGAATGAGATTCAGAAAGGATTTTATGAGTTTAAGGAGGATTGCAATACAGAAAAGAAAATTGCTTCCAAAGTGAAGACCATGGCAGAAGAAT CACTGTTATCAGATGGTGAAGACAAGATACAACGTGATCTCTTTGATCTTCTTAAGAATATAGTTCTTATAAGAGATCCGGAGGATGCAAGGAAATTCTA TCCTCGTTTCAACCTTGAGGATACTTCAAGTTTCCAGGACTTGGATGAGCAAAGCAAGAATGTCCTGAAAAGACTGTACTACGATTATTATTTCCATCGC CAAGAAGAGCTATGGCGGAAAAATGCTATGAAGACATTACCTGTTCTTCTCAATTCATCAGACATGCTCGCCTGCGGTGAAGATCTTGGACTCATACCAG CTTGTGTTCACCCTGTTATGCAAGATTTGGGAATGATAGGCTTACGCATTCAACGTATGCCTAACGAACCTGATCTTGAATTTGGTATTCCTTCGCAATA TAGCTACATGACGGTGTGCGCTCCATCATGTCACGACTGTTCTACGTTACGAGCTTGGTGGGAGGAAGATGCTGAAAGAAGACAGCGATACTTTAAGAGC ATCATAGGGTCTGATGAATTGCCTCCTGATACATGCCTTCCTGAAATTGCACATTTCATCATCAGGCAACATGTTGAGTCCCCATCCATGTGGGCAATCT TCCCATTACAGGACTTGTTGGCTCTAAAAGAGGAATACACGAAACGTCCTGCGAACGAGGAGACTATTAACGACCCCACGAATCCAAAGCACTACTGGAG ATACCGTGTACATGTTACATTGGAAACTCTGATGAAGGACAAGGAATTGAAATCCACCATAAAAGCTCTGATATCTGGGAGTGGAAGATCATACCCTGGA GCTGCTGCATCTACCGCAAAGCAACAAGTTGCAAGCAATGGCAAAGTTGCAGGGCAGTAA
AA sequence Show only first row Show all	>Lus10035408 pacid=23170570 polypeptide=Lus10035408 locus=Lus10035408.g ID=Lus10035408.BGIv1.0 annot-version=v1.0 MANLGMSLGAKSTKSVKVSFRIPYFTNWGQSLVVCGSEPALGSWNVKRGLLLSPVHQDDELIWCGTVTVPEEFSCEYSYYVVDDEKKVTRWEMGKKRQVF LPKGINGGDIVEFRDLWQTGDDDIPFRSSFKDVIFNSSWKMKVERPLGVQNKLEKEDSVLVHFRICCPNMEEETCAMPWRGTGVSVPMFSVRSEHDLGVG EFLDLKLLVDWAVESGFHLVQLLPINDTSVNGMWWDSYPYSSLSVCALHPLYLRVQALSANLQADVKKEIQEAKERLDGKEVDYEASLATKLSIAKKVFA KEKDAVLNSSAFQEFFSENEEWLKPYAAFCFLRDFFETSDHSQWGRFSDFSKEKLEKLVSKDNLHYDIICFHYYIQFHLHIQLSEAAQYARKKGVVLKGD LPIGVDRNSVDTWVYPTLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQDELEKEGIWDFDRLSRPYIRQEFLQEKFGKFWAVIGS SFLNEIQKGFYEFKEDCNTEKKIASKVKTMAEESLLSDGEDKIQRDLFDLLKNIVLIRDPEDARKFYPRFNLEDTSSFQDLDEQSKNVLKRLYYDYYFHR QEELWRKNAMKTLPVLLNSSDMLACGEDLGLIPACVHPVMQDLGMIGLRIQRMPNEPDLEFGIPSQYSYMTVCAPSCHDCSTLRAWWEEDAERRQRYFKS IIGSDELPPDTCLPEIAHFIIRQHVESPSMWAIFPLQDLLALKEEYTKRPANEETINDPTNPKHYWRYRVHVTLETLMKDKELKSTIKALISGSGRSYPG AAASTAKQQVASNGKVAGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	0	1
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	1.0	0.8918
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	4.0	0.8651
AT1G12330			unknown protein		Lus10004335 [exp]	4.4	0.8084
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	6.0	0.8229
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10025187 [exp]	10.1	0.8393
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	10.6	0.8519
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	11.5	0.8523
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	19.7	0.8455
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	19.8	0.8287
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	21.8	0.8385

Compare expression of checked genes

Lus10035408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.