Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56490 213 / 1e-72 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) AT1G31160 174 / 2e-56 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) AT5G48545 52 / 6e-09 HINT3 histidine triad nucleotide-binding 3 (.1) AT4G16566 45 / 2e-06 HINT4 histidine triad nucleotide-binding 4 (.1) AT5G58240 37 / 0.0008 FHIT FRAGILE HISTIDINE TRIAD (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031011 [exp] 247 / 5e-86 AT3G56490 228 / 2e-78 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10036217 [exp] 182 / 6e-54 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10025883 [exp] 53 / 3e-09 AT5G48545 223 / 1e-74 histidine triad nucleotide-binding 3 (.1) Lus10038220 [exp] 52 / 9e-09 AT5G48545 216 / 7e-72 histidine triad nucleotide-binding 3 (.1) Lus10028941 [exp] 51 / 5e-08 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023700 [exp] 217 / 6e-74 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Potri.015G124700 [exp] 179 / 2e-58 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) Potri.002G248800 [exp] 51 / 2e-08 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1) Potri.003G076400 [exp] 49 / 4e-08 AT4G16566 210 / 3e-71 histidine triad nucleotide-binding 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10035409 pacid=23170590 polypeptide=Lus10035409 locus=Lus10035409.g ID=Lus10035409.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGAAAGATGCCGCTCTGGCCGCCGCCGCAGCTCCGGTTCCCTCCGATTCTCTGACTATATTCGACAAAATCATCAACAAGGAAATCCCGG CTAATGTGGTTTACGAGGATGATAAGGTGCTAGCTTTCAGAGACATAAACCCTCAAGCTCCCACGCATATTGTGATCATTCCTAAAGTCAAGGATGGCTT GTCAGGCTTATCAAAAGCTGAAGAGAGGCACTGTCTGATCCTTGGCCTCCTGATGTACACTGCCAAGCTGGTTGCTAAGCAGGAAGGACTGGAGGACGGC TTTAGGATTGTGATTAATGATGGACCAAAGGGATGCCAGTCGGTCTATCATATCCATGTTCACCTTCTCGGAGGACGCCAAATGAACTGGCCTCCTGGTT AA
AA sequence Show only first row Show all	>Lus10035409 pacid=23170590 polypeptide=Lus10035409 locus=Lus10035409.g ID=Lus10035409.BGIv1.0 annot-version=v1.0 MASEKDAALAAAAAPVPSDSLTIFDKIINKEIPANVVYEDDKVLAFRDINPQAPTHIVIIPKVKDGLSGLSKAEERHCLILGLLMYTAKLVAKQEGLEDG FRIVINDGPKGCQSVYHIHVHLLGGRQMNWPPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	0	1
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	1.0	0.9458
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	1.7	0.9232
AT3G12260			LYR family of Fe/S cluster bio...		Lus10026163 [exp]	3.2	0.9123
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	4.5	0.9185
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	5.7	0.9149
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	7.2	0.9292
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	7.3	0.8986
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	7.9	0.9143
					Lus10003603 [exp]	9.2	0.9160
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	11.2	0.9036

Compare expression of checked genes

Lus10035409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.