Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47930 929 / 0 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) AT5G56490 61 / 2e-09 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 59 / 5e-09 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46760 52 / 1e-06 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G19500 47 / 4e-05 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G11540 45 / 0.0001 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G21482 45 / 0.0002 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT3G19820 45 / 0.0002 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031013 [exp] 1197 / 0 AT3G47930 932 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Lus10038620 [exp] 72 / 5e-13 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 66 / 5e-11 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 60 / 4e-09 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 58 / 2e-08 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 54 / 2e-07 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 52 / 8e-07 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10024289 [exp] 49 / 1e-05 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10003845 [exp] 46 / 7e-05 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G040300 [exp] 936 / 0 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.006G043232 [exp] 210 / 1e-64 AT3G47930 182 / 1e-54 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.002G178400 [exp] 65 / 8e-11 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 62 / 6e-10 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 59 / 6e-09 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10035411 pacid=23170469 polypeptide=Lus10035411 locus=Lus10035411.g ID=Lus10035411.BGIv1.0 annot-version=v1.0 ATGTCGAGAGCACTTTCTCTCCGGCGATCCATCAACCACCTCCTCCACCGCCGTCCTCTCTCCAACCCCATTTCCTTTGCCCCCGCCTCCCCTCTCCACC ACCCAATAAACCCTTCTCGCACATTCTGCACATCATCACCATCTCCCGCCCCCGCTTCCTCTGAAGCCGAGCTCCGTCGCTACCTAGGCTACACGGCCCT CGTCGTCTTCTGCGGAGCCGCAACTTACTTCTCATTCCCCTTCTCCGAGAACGCCAAGCACAAGAAAGCTCAGCTCTTTAGGTATGCCCCACTACCCGAC GACCTCCAAACCGTCTCCAATTGGAGCGGCACCCACGAAGTCCAGACTCGGAACTTCCACCAGCCGGAGAGTTTGGAGGAGTTGGAGAAACTGGTCAAGG ATTCGGATGAGAAGAAGGTCAGGATCCGGCCAGTTGGGTCTGGGCTGTCACCTAATGGGATTGGGCTGTCTAGGATTGGAATGGTGAATTTGGCTCTAAT GGATAGAGTGTTGGAAGTTGATAAGGAGAAGAAACAGGTTAGGGTTCAGGCTGGGATTAGGGTTCAGCAGTTGGTTGATGGGATCAAGGAGTATGGGCTT ACTTTGCAGAATTTTGCGTCCATCAGAGAGCAGCAGATTGGTGGCATTGTTCAGGTGGGTGCACATGGAACTGGTGCGAGGTTGCCGCCTATTGATGAAC AGGTCATTAGTATGAAGTTGGTTACTCCTGGAGAAGGCACAATAGAGATCTCCAAGGAGAAAGATCCCGAGCTATTTCATCTTGCTCGTTGTGGTCTTGG CGGCCTTGGAGTTGTTGCTGAAGTCACTTTACAGTGTGTTGATCGACAAGAGCTTGTGGAGCATACTTATGTCACGGACATGAACGATATCAAGAAAAAC CACAAGAAACTACTATCTGAGAATAAGCATGTGAAGTACTTGTATATTCCATACACAGATGTTGTTGTAGTTGTTACCTGCAACCCTATTTCGAAATGGT GGGGTCCCCCAAAGTTCACTCCTAAATATACTAAAGATGAAGCGATTCAGCATGTTCGCGATCTCTACAAAGAGACCCTCGAAAAATACAGGACTGCGGC GATCACAGCTAAGCCTTCTGATGACAGTCAACCCGACATTAACGAGCTGTCATTTACAGAGTTAAGAGACAAGTTGATTGCTGTAGATCCTCTCAACAAA GAGCACATTGTTAGGATTAACAATGCCGAGGCTGAGTTCTGGAGGAAGTCTGAAGGATACAGGGTTGGGTGGAGTGATGAAATTTTGGGGTTTGACTGTG GTGGGCAACAGTGGGTATCAGAAACATGTTTTCCAGCTGGTTCACTCGCCAACCCCAGAATGAAAGATCTTGAATACATTGAAGACTTGAAGCGGCTCAT AGAAAAACGGCGACTACCTGCACCTGGTCCGATAGAGCAACGTTGGACAGCTTGCAGTCAGAGCTATATGAGCCCAGCCTTCAGCTCAAACAAGGATGAT ATATTTTCTTGGGTTGGTATAATCATGTATCTCCCTACAATGGATGGCCGCCAGAGAAAGGACATCACCGACGAGTTCTTCCATTATCGACGTTTGACAC AGACAGAGCTGTGGGATAAATATGGTGCTTACGAGCATTGGGCTAAGATAGAGCTTCCGAGGGATAAGGATGATCAAGCAGCTCTGCGGGAGAGGCTAAG AAAGCGTTTCCCCGTTGATGCATATAGCGCTGCTCGAAAGAGATTAGACCCTAACAGGATCTTCTCTAACAACAAGCTGGAGAAGTTGTTCCCACTTTCA GAGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10035411 pacid=23170469 polypeptide=Lus10035411 locus=Lus10035411.g ID=Lus10035411.BGIv1.0 annot-version=v1.0 MSRALSLRRSINHLLHRRPLSNPISFAPASPLHHPINPSRTFCTSSPSPAPASSEAELRRYLGYTALVVFCGAATYFSFPFSENAKHKKAQLFRYAPLPD DLQTVSNWSGTHEVQTRNFHQPESLEELEKLVKDSDEKKVRIRPVGSGLSPNGIGLSRIGMVNLALMDRVLEVDKEKKQVRVQAGIRVQQLVDGIKEYGL TLQNFASIREQQIGGIVQVGAHGTGARLPPIDEQVISMKLVTPGEGTIEISKEKDPELFHLARCGLGGLGVVAEVTLQCVDRQELVEHTYVTDMNDIKKN HKKLLSENKHVKYLYIPYTDVVVVVTCNPISKWWGPPKFTPKYTKDEAIQHVRDLYKETLEKYRTAAITAKPSDDSQPDINELSFTELRDKLIAVDPLNK EHIVRINNAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGSLANPRMKDLEYIEDLKRLIEKRRLPAPGPIEQRWTACSQSYMSPAFSSNKDD IFSWVGIIMYLPTMDGRQRKDITDEFFHYRRLTQTELWDKYGAYEHWAKIELPRDKDDQAALRERLRKRFPVDAYSAARKRLDPNRIFSNNKLEKLFPLS EAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Lus10035411 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	5.9	0.9475
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	6.6	0.9556
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	6.9	0.9569
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	10.8	0.9520
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	11.0	0.9484
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	15.4	0.9498
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	17.0	0.9477
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	17.7	0.9464
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	19.6	0.9451
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	19.6	0.9372

Compare expression of checked genes

Lus10035411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.