Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 129 / 3e-34 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 118 / 5e-31 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 112 / 4e-28 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 45 / 0.0001 B3 REM6 Transcriptional factor B3 family protein (.1) AT4G33280 44 / 0.0001 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 43 / 0.0003 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031022 [exp] 713 / 0 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10019353 [exp] 340 / 6e-116 ND / Lus10019873 [exp] 281 / 7e-90 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 248 / 4e-76 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 243 / 2e-75 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 229 / 1e-69 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 217 / 2e-65 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019354 [exp] 210 / 6e-62 AT3G14640 281 / 2e-88 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) Lus10032315 [exp] 209 / 9e-60 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042500 [exp] 582 / 0 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 576 / 0 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 342 / 1e-113 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 315 / 9e-104 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 306 / 1e-99 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 305 / 2e-99 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 152 / 6e-43 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 152 / 7e-43 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 127 / 2e-34 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 122 / 3e-32 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10035416 pacid=23170521 polypeptide=Lus10035416 locus=Lus10035416.g ID=Lus10035416.BGIv1.0 annot-version=v1.0 ATGCAAAGAGTACGAGTTAGATCTTTCTCTAGTTTACATACATGTTGGATGCTTAAAGTCCCTCGTCCTATTGTCTCACTTGCCCGTAAGATAGGTTGCG AGCAACACGAGGCTAGAATGGATGGGTTGAGCACTCCCAAGGAAGTAAAATCTGCAGCTCTGATTCGTGCAGAAGAGATTCAATCAAATTTAGAACCTGC ATTTCCTAGCTTTCTGAAATCTTTAGTCCGATCACATGTTGGAAGTTGCTTTTGGATGGGTCTTCCTGGGCCATTCTGTAGAGCAAACTTACCGCAAGAA GATACTACAGTTACTTTAGAAAATGAGGATGGAAAGGAATTTAACATCAAATACATTGGATACAAGACAGGGTTGAGTGCTGGATGGAGACAATTCTGTG TTGCACACAAGTTGCTTGAGGGAGATGTTTTGGTGTTCCAGTTAGTTGGGAACTGCAGATTCAAGGTTTACGTTATAAGGGCTCATGATTTGGCTGAAGT GGATGGGGCGCTAGGTCTACTGAATTTGGATGCTCATATAAAACCAAACGATGCAGAGTTGATGGAACAAAAAGGTGGCGTAAATGCAGTGATGGCCATT GTACCCAGCAAAAGTGCCAAGAGAAAACGGTGTAGACCGCAATCTTCTTTCATTGGAAAGAAGAAACGGAAGACTAACAGGCCAAGATCATCATTTCAAA CCACTGGGCAAACAACAGCCGAGCAATCTGAAAATGACAGTGAAGAGGTTGGTTCAGAAGTTTTAGAAGGTTTCAAATTATCCTTCCCTGGGATTCAGTT TAGAGACATCCAGAGCTTTGAGGACTTCAGCATTGTGATCGAGGGATTAGTCATAGATTCTGAACTATCTGAAGAAGCTCGGAACAAGTACTACAAGCTG TGTTGCAGTCAAAATGCTTTTCTTCACGAGGATCTCATAAAGGGACTCAATTTTAAGTTGATTGCTGGCGTGATATCCGAAACCGTCCACATTGCTAATG CCATAAGGGAGTGCAGCCTTTCAACTTCGCAGGATGAGTTTGCTACGTGGGATAAGACATTGAGAGCCTCTGAGTTATTCGGCATGAATGTCGGGTTTCT ACGTGAAAGGCTGAGACAGCTTGTTGGCCTTGCCTTCGACTCGGAAGATGCTACAAAAACAAGAAGGTACATGGAAGCTAGAAGTGAGAGACTAGAGAAC GAAGTCGAGATAAGGAATCTAGAAGCAAAGCTTGTAGAATTAAAAGCAGCGTATGAAAGGTCTGGATGTGATATCACAAGTCTGAAATCAAAAGCTGAGA GATACGAGCTCAAGTTTCAGAAACAAGTTGTCGCTCCATGGTAA
AA sequence Show only first row Show all	>Lus10035416 pacid=23170521 polypeptide=Lus10035416 locus=Lus10035416.g ID=Lus10035416.BGIv1.0 annot-version=v1.0 MQRVRVRSFSSLHTCWMLKVPRPIVSLARKIGCEQHEARMDGLSTPKEVKSAALIRAEEIQSNLEPAFPSFLKSLVRSHVGSCFWMGLPGPFCRANLPQE DTTVTLENEDGKEFNIKYIGYKTGLSAGWRQFCVAHKLLEGDVLVFQLVGNCRFKVYVIRAHDLAEVDGALGLLNLDAHIKPNDAELMEQKGGVNAVMAI VPSKSAKRKRCRPQSSFIGKKKRKTNRPRSSFQTTGQTTAEQSENDSEEVGSEVLEGFKLSFPGIQFRDIQSFEDFSIVIEGLVIDSELSEEARNKYYKL CCSQNAFLHEDLIKGLNFKLIAGVISETVHIANAIRECSLSTSQDEFATWDKTLRASELFGMNVGFLRERLRQLVGLAFDSEDATKTRRYMEARSERLEN EVEIRNLEAKLVELKAAYERSGCDITSLKSKAERYELKFQKQVVAPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10035416 [exp]	0	1
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	5.7	0.8190
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033870 [exp]	13.6	0.6722
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	14.9	0.7959
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	17.5	0.7539
AT5G09225			unknown protein		Lus10020870 [exp]	21.2	0.7623
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	23.4	0.7876
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	23.8	0.7832
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	24.1	0.7782
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	27.4	0.7794
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	30.3	0.7800

Compare expression of checked genes

Lus10035416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.