Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04020 119 / 5e-27 calmodulin binding (.1) AT2G38800 91 / 1e-18 Plant calmodulin-binding protein-related (.1) AT3G54570 69 / 7e-12 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031023 [exp] 1345 / 0 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10039544 [exp] 88 / 1e-17 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10024175 [exp] 88 / 2e-17 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041100 [exp] 191 / 1e-49 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.006G043900 [exp] 181 / 1e-46 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.003G201400 [exp] 96 / 5e-20 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.001G024100 [exp] 93 / 4e-19 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035417 pacid=23170503 polypeptide=Lus10035417 locus=Lus10035417.g ID=Lus10035417.BGIv1.0 annot-version=v1.0 ATGAGCCCAGACAAGGTTGAATCTGGGAATGCTACAGACTCTGATCAGTTCTCTCTCAACTCTGACACCTTGTCTGTCACCTCAGATCAATCCTCATCCT CATCTTCTTCTTCGTCTTCAACAATTCCCCACCAGAAACCACCAAATTACATGAAGACCACCACTGCCTCTGTTGCAAAGAACACCAACGATTCCCAGAG ATCAAAGGGTTTGGAAAATCCAAAATTCAGGATGAGGAGATCTTTCAGAAGAAGACCAGATTCCAGCATCAAGATAGTTGATAATCCAGCATCAGATGAT GATTCATCTTCTTCTGGTTCTGAGGGTGATGCTAAATCTGATTCCAAAACATCTGTTGCGATGAGAAGAACATCTGGTTCAAGACTAACAAAGGTAGCAA GTTTGAGAATCAGGAGGCAATCCACTGTAGCGAGATCCACTTGTTCATCGGCTCTAAGAGATTCCAAACTTGCCACCAAGCATGAAGAAAACAACAGCAA CTCCAATGAAGGAACTGCAACAGAAAAGGTTTGTCCATATAGCTACTGTTCATTGCACGGACATCACCATTCCAGCGATCAGGTTCCTATTACATTGAAG CGATTCGTCTCGATGAGGCGAAGATTGTTGAAGCCACAAAAGAAGACCAACAACTCATCAGATTCCAGGAAAAAGAAGCTAACGAATCAAACAAAGAAAG GGGTTGTCGTTTCTGGAAAAAGTGGGAAAGCAGCTAATGGCGGCAGACAAAAATCTTGTGTTGTTAAGGCAAATGGTGGATTATTAGAGACTGATAGCTC CGATGTTTTTCAAGATAAGGACTTGGTCGTTTCCGCAGATTATAAGCCTGATGAGGATGGTGGGATTGTACATCTTTCATCTGAAAACTCAGTGGAGAAG AACAAGAAGAACATGGGATTATGGGGAGTGATCTACCAGCACATGGCATCAGGCATTGCTGCAGAAGGTGATGAATCCAGCCAGGCTGAGAAGACCGGAA TGGATCGAAACAAAGATCCGGAAGAGGGGAACGGAGGAATCAGGAATGTCGATTCGCACCAGCTTGATGCAATCAAGCTTGTCCAGGAAGCATTTGACAA GATCCTCTCAGAAATCCCAGATCCTTTGTCTGATAATCAGTCAGTTGATTATAGTGATGCCGGTTCAGATGCTAGTAGTGCTCCAACTTGTGATGATTCG CAAAAAGTCAGAATCGAACAAGAACAAATGGAGCTGAAAAAGGCTGAAACTTTCAATGATTCAGAATCAAAGGAGGGAAACAAATCTGCTGCTAAGAAGA AGGCCAACGGTTGGAGCAACCTGAAGAAGATTATGATAATGAAGAGATTTGTCAAGGCGATGGATAATGTCAAGAACTTCAATCTACGTAAGCGTCAACA AGATCATCTTCGGTGTACGGAGCAAGAGGGGGGAGCTGAAAAGGTTAATCTGCGGCCACAGACGATTGGGGAGAAGAAGAACTCAGAGGAATGGATGCTT GATTATGCTCTTCAAAAGGTGATTTCAACACTGGCTCCAGCTCAGAAGAGGAAAGTGGCTCTGATTGTACAAGCATTCGAAACAGTCGCGCCTCAGGGAG ATACTGATGCTGCAGCTTCTTCTACTCCCAAAACTCCAGTTCATAAGGAACCTGAGCCAGAACAGAACATAATATTCGGGGTCTTACTTCGAAAAGTATC CACTGTTCCGAAAGAGAGTCGTAATAATGCTGATCGCGGTGTCAGTGATTCTTACTTGATGAAGAGCAGATTGAAGGCAATTGATCAGATTGCTGACGAC AATAGTATTGATTATGTTACCACTGTTCCGAAAGAGAGTCGTAATAATGCAGATGGTACAGATTGCGATGTCGGTGGTTCTGATTTGATGAAGAGCAGAT TGAAGTCAATTGATCAGATTGCTGAAGAACCAATTGCTGAAGACAATAGTGTTGATAATGTTACCTTAGCTCCTGCAGCAGAAAAAGAAGAAGAACCTCC GGTCGAAGACGTTCAGCCATCCATTGAAGCTGAAAATGATGAGGAGCTTGATGTTGATAGAAATGCAGCGGAACCTGAAGCAGAGATGGGGGGGAACCAG AAACATAAGAATCTGTGGTTTCTGATATACAAGCACATGGTTTCAGGAACAACACAACCACTTCAGGAATCCGGTGAAGAAGTCAAAGGAGGAAGAAACG AGTCCCGGTCACAGACTGAAGCCATAAGGCTTGTAGAGGAGGCGATCGACGAAATTCCTCTTCCGGAGACTCAAGATGATGCACCACCTGCTGATGACGA TCATCCATCAGTAGCCACCAGAGACATAAATTCCCAAGTAGAAGATAAACATGATGAAAGAACAGAGATAGAAACCACAGTTGAAGACCAGAAAGAAGAA GCAAGGCCAGCAGCGAAGAAGAGCTGGAGCAATCTGAAGAAGGTGATCTTACTGAAGAGATTCATCAAGTCATTGGAGAAAGTGAACGACACCTGCTTGA CTCCGTCGTCGAGAAAGTTCATCAACCCCAAGGAACCGAAGTTTCTTCCTTCGGTGGATGGGCAAGAAGCTGAGAAGGTTTTGCTGAGGCGCCAAGATGT TGGAGACAGGAAAAGTGGTGATGAATGGATGCTTGATCATGCTCTTCGACAGGTTGTAGCCCAGCTGACACCGGTTCGTCGAAGAAAAGTTGAGCTGCTT GTAGAGGCATTTGAGACTGTCAGTCCCACCATTGGCAACTGA
AA sequence Show only first row Show all	>Lus10035417 pacid=23170503 polypeptide=Lus10035417 locus=Lus10035417.g ID=Lus10035417.BGIv1.0 annot-version=v1.0 MSPDKVESGNATDSDQFSLNSDTLSVTSDQSSSSSSSSSSTIPHQKPPNYMKTTTASVAKNTNDSQRSKGLENPKFRMRRSFRRRPDSSIKIVDNPASDD DSSSSGSEGDAKSDSKTSVAMRRTSGSRLTKVASLRIRRQSTVARSTCSSALRDSKLATKHEENNSNSNEGTATEKVCPYSYCSLHGHHHSSDQVPITLK RFVSMRRRLLKPQKKTNNSSDSRKKKLTNQTKKGVVVSGKSGKAANGGRQKSCVVKANGGLLETDSSDVFQDKDLVVSADYKPDEDGGIVHLSSENSVEK NKKNMGLWGVIYQHMASGIAAEGDESSQAEKTGMDRNKDPEEGNGGIRNVDSHQLDAIKLVQEAFDKILSEIPDPLSDNQSVDYSDAGSDASSAPTCDDS QKVRIEQEQMELKKAETFNDSESKEGNKSAAKKKANGWSNLKKIMIMKRFVKAMDNVKNFNLRKRQQDHLRCTEQEGGAEKVNLRPQTIGEKKNSEEWML DYALQKVISTLAPAQKRKVALIVQAFETVAPQGDTDAAASSTPKTPVHKEPEPEQNIIFGVLLRKVSTVPKESRNNADRGVSDSYLMKSRLKAIDQIADD NSIDYVTTVPKESRNNADGTDCDVGGSDLMKSRLKSIDQIAEEPIAEDNSVDNVTLAPAAEKEEEPPVEDVQPSIEAENDEELDVDRNAAEPEAEMGGNQ KHKNLWFLIYKHMVSGTTQPLQESGEEVKGGRNESRSQTEAIRLVEEAIDEIPLPETQDDAPPADDDHPSVATRDINSQVEDKHDERTEIETTVEDQKEE ARPAAKKSWSNLKKVILLKRFIKSLEKVNDTCLTPSSRKFINPKEPKFLPSVDGQEAEKVLLRRQDVGDRKSGDEWMLDHALRQVVAQLTPVRRRKVELL VEAFETVSPTIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	0	1
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	1.0	0.7587
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	2.0	0.7455
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	6.0	0.6400
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	6.2	0.7102
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	17.3	0.6846
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	18.4	0.6372
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	26.5	0.5764
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	26.8	0.6127
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	28.4	0.6419
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	39.7	0.6318

Compare expression of checked genes

Lus10035417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.