Plant FIBer expression Database

Lus10035418 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57150 640 / 0 ATNAP57, ATCBF5, NAP57 homologue of NAP57 (.1)
AT5G14460 74 / 1e-13 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023565
[exp]
756 / 0 AT3G57150 743 / 0.0 homologue of NAP57 (.1)
Lus10040451
[exp]
632 / 0 AT3G57150 582 / 0.0 homologue of NAP57 (.1)
Lus10003661
[exp]
74 / 1e-13 AT5G14460 628 / 0.0 Pseudouridine synthase family protein (.1)
Lus10022284
[exp]
73 / 2e-13 AT5G14460 551 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G044100
[exp]
713 / 0 AT3G57150 729 / 0.0 homologue of NAP57 (.1)
Potri.016G041200
[exp]
706 / 0 AT3G57150 741 / 0.0 homologue of NAP57 (.1)
Potri.001G343100
[exp]
72 / 4e-13 AT5G14460 585 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF08068 DKCLD DKCLD (NUC011) domain
CL0178 PUA PF01472 PUA PUA domain
Representative CDS sequence
>Lus10035418 pacid=23170649 polypeptide=Lus10035418 locus=Lus10035418.g ID=Lus10035418.BGIv1.0 annot-version=v1.0
ATGTCCGAAGTCGAAATCTCCCGCTCCGATAAGAAAAAACTCAAGAAGAAGACCGGTTCAACTGACCCGGAGACCGACTCTGACCCCATGTCTGCCGCCA
AGGACTCCTCCGCCGCCGTCTGGCCAATCCTCCTCAAGAACTACGAGCGCCTCAATGTTCGCACTGGTCACTACACACCACTCCCTTCCGGCTACTCTCC
TCTCAAGAGGCCTCTCGCCGAGTACATCCGCTACGGAGTGATGAACCTCGACAAGCCGGCGAATCCTTCTTCTCACGAGGTGGTCGCCTGGATCAAGCGT
ATTCTCCGATCGGAGAAAACCGGCCACAGCGGCACTCTGGACCCCAAAGTCACAGGTGCCGGGAAAGAGTATGTCTGTGTTGCGAGGTTGCACGATAAGG
TCCCCGATGTTGCTAAAGTTGGCAGAGCTCTGGAGACTCTCACCGGAGCTGTCTTCCAGAGGCCTCCGCTGATTTCTGCAGTGAAGAGGCAGCTCAGGAT
TAGGACTGTTTATGAGAGTAAGCTGTTGGAGTATGATGTGGATAGGCATTTGGTTGTCTTCTGGATTTCTTGTGAGGCTGGTACTTATGTTAGGACTATG
TGTGTCCATTTGGGGCTGGTTCTTGGCGTTGGTGCTCATATGCAGGAGCTGAGAAGGGTTCGATCCGGGATTTTAGGTGAAAAGGATAACATGGTGACAA
TGCACGATGTTATGGATGCTCAGTGGGCTTATGATAACTATAGGGATGAATCTTACTTGAGGAGGGTGATTATGCCGTTGGAGACGCTTTTAACTAGCTA
CAAGAGGCTTGTTGTGAAGGATTCAGCTGTGAATGCAATCTGCTATGGTGCGAAGCTGATGATTCCTGGGCTACTGAGGTTTGAGAACGATGTTGAAGTT
GGGGAGGAAGTTGTTCTGATGACAACGAAAGGTGAGGCGATTGCTTTGGGGATTGCTGAGATGACTACTGCTGTTATGGCTACCTGTGATCATGGTGTGG
TGGCTAAGATCAAGAGGGTGGTTATGGATCGGGATACTTACCCGAGGAAATGGGGGCTGGGACCGAGGGCTTCGATGAAGAAGAAGTTGATTTCCGAAGG
GAAATTGGATAAGCATGGGAAGCCGAATGAGAAGACGCCACAAGAATGGGCGAGGAACTTGGTTCTGCCCACCGGTGGAGACTCTATGGTTGCTGCGGTT
GCTGCTGAACCAGTTGCGGAGATGAAACCGGTGATCGAGGAGGAGGACTTGGGAACCGAGAAGAAAAAGAAGAGTAAGCGCAAGCATGATGATGAAACAA
CTGATGATGCTGAGGCTACAGCCAAGAAAGCTAAACTTGAGAATGTGGAAGGTGAGGAAACTCCCAAGGTGAAGAAATCGAAGGAAGTGAAGGTCGAAAG
TGAGGATGGCGATACAACAACTGAGAAAAAGAAGAAGAAGGAGAAGAAAAAGAAGGATAAGGACGTTGAAGAGGCTGCTGCTTCGCCCGACACAGAGAAG
TCGGAGAAGAAGAAGAAGAAGAAGCTAGAGAAGGAGGCTGCTGCTGCTGCTGCTGCCATTGACAATGGGAAAGAAGATGGCGAGGCTGATAAGAGTGAGA
AAAAGAGGAAGAAGAAGAAAAAGGACAAAGATGGTGAAGAATGA
AA sequence
>Lus10035418 pacid=23170649 polypeptide=Lus10035418 locus=Lus10035418.g ID=Lus10035418.BGIv1.0 annot-version=v1.0
MSEVEISRSDKKKLKKKTGSTDPETDSDPMSAAKDSSAAVWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKR
ILRSEKTGHSGTLDPKVTGAGKEYVCVARLHDKVPDVAKVGRALETLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDVDRHLVVFWISCEAGTYVRTM
CVHLGLVLGVGAHMQELRRVRSGILGEKDNMVTMHDVMDAQWAYDNYRDESYLRRVIMPLETLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEV
GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWARNLVLPTGGDSMVAAV
AAEPVAEMKPVIEEEDLGTEKKKKSKRKHDDETTDDAEATAKKAKLENVEGEETPKVKKSKEVKVESEDGDTTTEKKKKKEKKKKDKDVEEAAASPDTEK
SEKKKKKKLEKEAAAAAAAIDNGKEDGEADKSEKKRKKKKKDKDGEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10035418
[exp]
0 1
AT4G25340 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2... Lus10031121
[exp]
1.0 0.9609
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Lus10012112
[exp]
1.7 0.9211
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Lus10010430
[exp]
2.0 0.9330
AT5G64670 Ribosomal protein L18e/L15 sup... Lus10032390
[exp]
2.8 0.9018
AT5G61030 GR-RBP3 glycine-rich RNA-binding prote... Lus10017852
[exp]
5.3 0.9110
AT1G02370 Tetratricopeptide repeat (TPR)... Lus10004173
[exp]
6.3 0.9097
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Lus10002338
[exp]
7.4 0.8943
AT5G40770 ATPHB3 prohibitin 3 (.1) Lus10032072
[exp]
9.5 0.9020
AT2G40290 Eukaryotic translation initiat... Lus10007521
[exp]
10.1 0.8756
AT5G03740 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone... Lus10020541
[exp]
10.4 0.8902

Lus10035418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.